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SMIL Sequence Wizard 1.0

SMIL Sequence Wizard 1.0


SMIL Sequence Wizard - Create SMIL sequences of QT movies more>>
SMIL Sequence Wizard is another QuickTime Player 4.1 script from Apple that will create a SMIL sequence of QuickTime movies. Each movie in the sequence can be made a clickable link to other webpages.

This is perfect for any ad insertions in a web page. All you need to do is run the script and answer the questions.


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Download (94KB)
Added: 2006-01-22 License: Freeware Price:
1375 downloads
Quick Sequence Diagram Editor 3.0.5

Quick Sequence Diagram Editor 3.0.5


A tool for generating professional UML sequences more>>
Quick Sequence Diagram Editor 3.0.5 is a versatile and easy-to-use tool which offers you an effective way for generating professional UML sequences. Quick Sequence Diagram Editor is a fast and reliable tool, written in Java 5, for generating professional UML sequence diagrams from text. Supports actors, con-/destructors, threads, broadcasts, notes, and fragments. It can serve as a Javadoc taglet. Exports PDF, SVG, (E)PS, PNG.

Enhancements:

  • Allows to hide return arrows
  • Makes scrolling the text area faster
  • Fixes two bugs


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Download (1.8MB)
Added: 2009-06-14 License: Freeware Price: FREE
24 downloads
CLC Sequence Viewer 6.2

CLC Sequence Viewer 6.2


CLC Sequence Viewer is a freeware that creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. more>>

CLC Sequence Viewer 6.2 is a freeware that creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.

Major Benefits:

  • You will have easy access to a large number of integrated research tools:
    • Creating and editing alignments
    • Interactive restriction site analysis
    • Phylogenetics
    • Integrated GenBank searches
    • Advanced DNA to Protein translation
  • You can get easy access to hardware accelerated database searches
    • Plug in the Bioinformatics Cube and increase your search speed up to 200 times
  • Your research work will be easy to carry out
    • The program is graphically based, intuitive, and user-friendly
  • You will have a bioinformatics solution that continuously evolves
    • The frequent program updates keep you up to date with the latest scientific developments. Your ideas for future improvements will have top priority.
  • You will get superior customer service
    • Free support to all users.

Major Features:

  1. Bioinformatics features in CLC Sequence Viewer
    • Multiple alignment of DNA, RNA, and proteins
      • Two proprietary algorithms
      • ClustalW
      • Muscle
      • T-Coffee
      • MAFFT
      • Kalign
    • Consensus sequence determination and management
    • Conservation score along alignments
    • Open reading frame determination
    • Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice
    • Translation from DNA to proteins (all genetic translation tables)
    • Reports with residue composition, molecular weight and iso electric point (for proteins)
    • Neighbor-joining and UPGMA phylogenies
    • Restriction site analysis and viewing
    • Create reverse complement
    • Shuffle sequence
    • Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio
  2. Other features in CLC Sequence Viewer
    • Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases
    • All types of files can be saved in local projects and launched from the program
    • Detailed history log
    • User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences
    • Text-based sequence view
    • Easy printing of reports and graphics
    • Export of user-defined figures to various graphics file formats
    • Import and export of data in a large number of file formats
    • Option of working with different files and in different file projects at the same time
    • Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects

Enhancemnets:

  • New features:
    • Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
    • Advanced view of elements in a folder including batch editing.
    • Extract sequences improvements
    • You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
    • "Find" in text view now accepts Enter as command to find the next hit
    • Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
    • Export of annotations in GFF format (note that annotations with joined regions are not supported)
  • Bug fixes:
    • Problem rendering scatter plots without lines
    • DNA strider files could loose name upon import
    • Rare misplacement of annotations when editing very large sequences
    • Various bug-fixes
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Download (21.8MB)
Added: 2009-08-17 License: Freeware Price: Notavailable
downloads
 
Other version of CLC Sequence Viewer
CLC Sequence Viewer 6.1GenBank, including download facilities and full graphical overview of sequence annotations ... Shuffle sequence. Option of viewing and graphical manipulation of bioinformatics analyses
License:Freeware
Download (21.7MB)
20 downloads
Added: 2009-05-31
CLC Sequence Viewer 6.1Bioinformatics program for DNA, RNA, and protein sequence analysis. as CLC Sequence Viewer. Its still the same software and we havent removed any of the features and
Price: FREE
License:Freeware
Download (21.7MB)
208 downloads
Added: 2009-06-02
CLC Sequence Viewer 6.0.2CLC Sequence Viewer brings you a useful math and science tool that ...CLC Sequence Viewer 6.0.2 brings you a useful math and science tool that
License:Freeware
Download (22.7MB)
downloads
Added: 2009-03-12
CLC Sequence Viewer 5.1.1as CLC Sequence Viewer. Its still the same software and we havent removed any of the features and ... no plans to do so. CLC Sequence Viewer is a tool that enabling users to make basic bioinformatics
Price: FREE
License:Freeware
Download (35.8MB)
408 downloads
Added: 2008-10-04
Sequence Analysis 1.6

Sequence Analysis 1.6


Sequence Analysis - DNA/protein sequence analysis more>>
Sequence editing, reverse complement, protein translation, ORF finding, secondary structure, composition, isoelectric point, primer design, pairwise comparison, publish layout, sequence reformatting. Fetches sequence entries directly from the NCBI via Accession number or GID. Reads most sequence formats.
This (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.
Enhancements:
- Fixed launching conflict introduced with QuickTime 7.0.4
- Digest: Using "REBase 601" enzyme list
- Allow launching with Java 5 (JDK 1.5).
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Download (2.1MB)
Added: 2006-01-18 License: Freeware Price:
1389 downloads
 
Other version of Sequence Analysis
Sequence Analysis 1.6.0Sequence Analysis is such a handy program which assists you in editing ...Sequence Analysis 1.6.0 is such a handy program which assists you in editing
Price: $0.00
License:Freeware
Download (2.1MB)
downloads
Added: 2006-01-15
Sequence 2.1.1

Sequence 2.1.1


Sequence offers you a very useful tool which is able to capture and save an image or a movie of your screen to your computers clipboard, or a file (in an image format of your choice). more>>

Sequence 2.1.1 offers you a very useful tool which is able to capture and save an image or a movie of your screen to your computer's clipboard, or a file (in an image format of your choice). A video or screenshot can be emailed, uploaded on the web, or passed around however you want. Using a multithreaded code and a 64-bit enabled compression system, Sequence can handle capturing DVD, audio, or any other multimedia application. Sequence is powerful enough to simultaneously record from your webcam and your screen.

With the voice recording function, you can easily describe what you are doing on your screen. Simply use your Mac's built-in microphone. With Sequence, its easy to make training videos, product demos, create tutorials, archive streaming video, the possibilities are endless! For instance, you could easily help your friends and family learn more about their computers. No need for boring and complicated documentation!

With Sequence you can give clear and precise explainations, including mouse movements and keyboard entries. Sequence supports saving screenshots as bmp, pict, gif, jpg, png, tiff, pdf. Sequence was built for Mac OS X Leopard, using the best of Mac OS X technologies: Core Animation, QuickLook, QTKit, Core Image, iChat Theater, etc.

Major Features:

  1. Universal Binary
    • This product is compiled as a universal binary. Coinciding with apple's release of Intel-based computer systems, this will allow the product to run on any Macintosh, containing either a PowerPC chip or an Intel chip, without any speed slowdown, or program emulation.
  2. Modern Code
    • Built from the ground up in Cocoa and Objective C, this product supports numerous Mac OS X technologies that include: animation, sheets and help tips.
  3. The Right Price
    • All purchases of the applications include free updates / upgrades, forever!
    • Offer great volume discounts if you purchase multiple licenses.
    • Those purchasing the applications for the educational sector can receive a 20% discount coupon code and, since are a French company, all US and international purchases are automaticaly tax exempt.
  4. Strong Customer Support
    • Are always here to help whenever you need. Send an email with any questions you may have or visit the support website to browse Frequently Asked Questions
  5. Staying In Touch
    • Love hearing from all of the customers, new and old. Let know what you're up to and will do the same!
    • This product works because it's built by people like you for people like you. Need a feature? Request it.

Enhancements:

  • Support of Mac OS X 10.6 Snow Leopard
  • Bug fixed with user license and some proxy servers
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Added: 2009-08-20 License: update/patch Price: $40.00
downloads
Link Sequence Downloader QED 0.21

Link Sequence Downloader QED 0.21


Link Sequence Downloader QED is a good tool possessing desirable qualities in downloading a series of files, such as images and videos, to your hard-drive. more>>

Link Sequence Downloader QED 0.21 is a good tool possessing desirable qualities in downloading a series of files, such as images and videos, to your hard-drive.

By entering a link, with ranges in square brackets - a large list of files can be downloaded in one go. For example, the Link Sequence: http://www.example.com/videos/[1-10]/vid[001-004].mpg would attempt to download forty mpeg video files; four files named vid001.mpg, vid002.mpg, vid003.mpg, vid004.mpg from each of ten folders numbered 1 to 10.


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Added: 2008-01-22 License: Freeware Price:
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Other version of Link Sequence Downloader QED
Link Sequence Downloader QED 0.10Link Sequence Downloader QED - Download a sequence of files. Link Sequence Downloader QED 0.10 - ...Link Sequence Downloader QED is a tool for downloading a series of
License:Freeware
Download (185KB)
1166 downloads
Added: 2006-08-21
yEd Diagram Editor 2.3.1

yEd Diagram Editor 2.3.1


Use yEd to quickly create flow charts, UML diagrams, mind maps, and many other kinds of diagrams, graphs and networks more>>
Use yEd to quickly create flow charts, UML diagrams, mind maps, and many other kinds of diagrams, graphs and networks.

Choose from a widerange of highly sophisticated layout algorithms to automatically arrange your diagrams in no time.
A intuitive and visually appealing user interface makes creating diagrams fun.
Once you are done with creating a diagram you can save, print or export it to popular formats like WMF, JPEG, GIF, XML, PNG or SVG.


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Added: 2005-07-07 License: Freeware Price:
3113 downloads
UML Statechart Framework 0.9.4

UML Statechart Framework 0.9.4


Program that implements UML statecharts in C++ and Java UML implements UML statecharts in C++ and Java more>> Program that implements UML statecharts in C++ and Java

UML implements UML statecharts in C++ and Java. Next to the standard elements of FSMs, hierarchical and concurrent states are as well supported as pseudostates, segmented transitions, timed events and an eventqueue using a thread pool.

Main features:
- Very easy to use API (See documentation for details)
- Implemented in C++ and Java
- Does require only a very small amount of memory
- Complete object-oriented design (all elements are real objects)
- Parallel usage of the statechart infrastructure. Runtime specific data is encapsulated in a small object.
- Support for many elements of statecharts
- Simple, hierarchical and concurrent states
- Start and final states
- History and deep-history pseudostates in hierarchical states
- Fork- and join pseudostates for concurrent states
- Segmented transitions using junction points
- Transitions can cross borders of composite states (implicit entry/exit)
- Entry, do and exit actions in states
- Events, guards and actions for transitions

System requirements:
- Java

Enhancements
- Fixed a ConcurrentModificationException bug when handling timeout events.
- Fixed shutdown procedure when the created threads are non-deamon threads.

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Download (113KB)
Added: 2009-06-11 License: GPL Price: FREE
184 downloads
Mike Golding Yacht Racing 1.0

Mike Golding Yacht Racing 1.0


Have the latest Mike Golding News in your dashboard. more>> Visual Paradigm for UML is an easy-to-use, complete-featured UML modelling tool that supports complete software development life-cycle - analysis, design, construction, testing and deployment. This UML modeling tool helps you build quality applications faster, better and at lower cost. You can draw all types of UML diagrams, reverse source code, generate code from class diagrams and generate documentation. This UML CASE tool also provides abundant UML resources including UML tutorials, UML sample projects and UML interactive demos.
VP-UML Features:
+Complete UML notation support (use case diagram, sequence diagram, collaboration diagram, class diagram, state diagram, activity diagram, component diagram and deployment diagram)
+OOAD support - object-oriented analysis (OOA), object-oriented design (OOD)
+Use case modeling (use case scheduling, use case description...)
+Textual analysis for identifying candidate classes, use cases, actors...
+CRC Card for finding objects
+Business Workflow diagram
+Incremental roundtrip engineering
+Reverse engineering - code to diagram, code to model (Java to UML models, Java to UML diagram)
+Reverse engineering XML, DotNET dll/exe, C++, CORBA IDL
+Code Generation - diagram to code, model to code (UML to code, UML model to Java)
+Report generator for generating documentation to HTML/PDF
+Auto diagram layout - arrange classes and connectors in UML diagrams in different elegant styles automatically
+Import/export XMI
+Import Rational Rose file
+Visio Integration - draw UML diagrams with Visio stencils
+Export diagrams to SVG, PNG, JPG
+Version control
+Template and Plug-in
+Multilingual support
+More...
Other UML Modeling Tools / UML Plug-ins:
Java Platform (Mac OS X/Windows/Linux):
+SDE for Eclipse
+SDE for NetBeans
+SDE for Sun ONE
+SDE for Oracle JDeveloper
+SDE for IBM WebSphere (WSAD)
+SDE for Borland JBuilder
+SDE for IntelliJ IDEA
Windows Platform:
+SDE for MS Visual Studio .NET
+More SDE...
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Added: 2008-12-27 License: Freeware Price: FREE
191 downloads
Timing Diagram Symbols for Omnigraffle 1.0

Timing Diagram Symbols for Omnigraffle 1.0


Timing Diagram Symbols for Omnigraffle is a simple and salutary stencil for Omnigraffle that helps you to draw timing diagrams more>>

Timing Diagram Symbols for Omnigraffle 1.0 is a simple and salutary stencil for Omnigraffle that helps you to draw timing diagrams

Requirements: Mac OS 10.3 or 10.4 Omnigraffle 3.2 or higher

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Added: 2005-05-12 License: Freeware Price:
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CLC Main Workbench 5.5

CLC Main Workbench 5.5


CLC Main Workbench is described as a convenient as well as powerful tool that lets you aggregate all DNA sequence analyses of CLC Gene Workbench and all protein sequence analyses of CLC Protein Workbench. more>> <<less
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Added: 2009-10-07 License: update/patch Price: Notavailable
downloads
Indian Recipes 0.1

Indian Recipes 0.1


Have the Best Indian recipes on your Dashboard. more>> SDE for JDeveloper is a UML CASE tool/plug-in tightly integrated with JDeveloper. This UML software supports full software development lifecycle - analysis, design, implementation, testing and deployment. This UML modeling tool helps you build quality applications faster, better and cheaper. You can draw all types of UML diagrams in JDeveloper, generate Java code, reverse engineer Java code to class diagrams and generate documentation.
SDE Features:
+the latest UML support (use case diagram, sequence diagram, collaboration diagram, object diagram, class diagram, statechart/state diagram, activity diagram, component diagram, deployment diagram)
+Use case modeling (use case description, scheduling...)
+Textual analysis for identifying candidate classes, use cases, actors, flow of events...
+Business Workflow diagram
+CRC Card diagram
+Reverse engineering - code to model, code to diagram (Java to UML models, Java to UML diagram)
+Instant Reverse for XML, XML Schema, Dot NET dll/exe, C++, CORBA IDL
+Code Generation - generate code, model to code, diagram to code (UML to code, UML model to Java)
+Incremental round-trip engineering
+Automatic synchronization between source code and diagrams
+Plug-in and template
+Automatic diagram layout - rearrange classes and connectors in UML diagrams in different styles
+Import/export XMI
+Import Rational Rose
+Export diagrams to SVG, PNG, JPG
+Microsoft Visio Integration - draw UML diagrams with MS Visio shapes
+Report generator for generating UML documentation to HTML or PDF
+Version control
+Multilingual support
+More...
Other UML Modeling Tools / UML Plug-ins:
Java Platform (Windows/Linux/Mac OS X):
+SDE for Oracle JDeveloper
+SDE for IBM WebSphere (WSAD)
+SDE for Borland JBuilder
+SDE for IntelliJ IDEA
+SDE for Eclipse
+SDE for NetBeans
+SDE for Sun ONE
Windows Platform:
+SDE for Microsoft Visual Studio .NET
+More SDE...
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Download (224KB)
Added: 2009-03-28 License: Freeware Price: FREE
192 downloads
jUML 4.0.0

jUML 4.0.0


A UML diagram application that is capable of reverse engineering Java source code to create relationship diagrams more>> A UML diagram application that is capable of reverse engineering Java source code to create relationship diagrams

jUML is a UML diagram application that is capable of reverse engineering Java source code to create relationship diagrams, source code generation based on a user created UML diagram, and saving/restoring of jUML projects.

System requirements:
-

Enhancements
- This is a working release. You can either import files to show relationships or create a new diagram and generate/test code and save the project.

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Download (532KB)
Added: 2009-06-06 License: GPL Price: FREE
196 downloads
iPhone Pack

iPhone Pack


iPhone Pack - Free icon package specially designed for your iPhone more>> SDE for IntelliJ IDEA is a UML CASE tool/plug-in tightly integrated with IntelliJ IDEA. This UML modeling software supports full software lifecycle - analysis, design, implementation, testing and deployment. This UML CASE tool helps you build quality applications faster, better and cheaper. You can draw all types of UML diagrams in IntelliJ IDEA, reverse engineer Java code to class diagrams, generate Java code and generate documentation.
SDE Features:
+Support UML 2.1
+Business Process diagram
+Mind Mapping
+Requirement Modeling with automatic generate requirement ID (Enhanced)
+Event-driven Process Chain
+Organization Chart
+Navigate between operation and sequence diagram (New)
+Better annotation for sequence diagram (New)
+Callout and Freehand shape
+Nicknamer - create translated copies of model
+Model Transitor
+User Interface Designer
+DFD
+Use Case Details Editor - An all-in-one environment for specifying a general model specification and use case descriptions
+EJB diagram and code generation
+ORM support - generate Java objects from database
+Database generation and reverse engineering
+Reverse engineering - code to model, code to diagram
+Reverse engineering Java, C++, XML, .NET exe/dll, CORBA IDL and Python
+Code Generation - model to code, diagram to code
+Java Round-trip engineering
+Automatic synchronization between source code and diagrams
+Automatic diagram layout and reroute connector
+Modeling collaboratively with VP Teamwork Server, CVS, Subversion and Perforce
+Support Stored Procedure and Trigger
+Export diagrams to JPG, PNG, SVG, EMF, PDF
+PDF/HTML/MS Word Report generator
+Access code for Floating License (New)
+More...
Other UML Modeling Tools / UML Plugins:
Java Platform (Windows/Linux/Mac OS X):
+SDE for Eclipse
+SDE for Oracle JDeveloper
+SDE for Borland JBuilder
+SDE for NetBeans
+SDE for Sun ONE
+SDE for WebLogic Workshop
Windows Platform:
+SDE for Microsoft Visual Studio
+More SDE...
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Download (185KB)
Added: 2008-07-03 License: Freeware Price: FREE
186 downloads
Nucleic Acid MW widget 1.0

Nucleic Acid MW widget 1.0


Nucleic Acid MW widget provides you with a versatile widget which helps you calculate the molecular weight of a nucleic acid sequence. more>>

Nucleic Acid MW widget 1.0 provides you with a versatile widget which helps you calculate the molecular weight of a nucleic acid sequence.

Requirements: Mac OS X 10.4

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Download (97.7KB)
Added: 2006-10-04 License: Freeware Price:
downloads
 
Other version of Nucleic Acid MW widget
Nucleic Acid MW widget 1.0allows to calculate the molecular weight of a nucleic acid sequence. acid sequence. Requirements: Mac OS X 10.4 or later
License:Free
Download (100K)
downloads
Added: 2006-10-05
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