Free toolset software for mac

HighLine is a high-level IO library that provides validation, type conversion, and more for command-line interfaces.
HighLine also includes a complete menu system that is capable to crank out anything from simple list selection to complete shells within just minutes of work.

Main features:
- Saving time
- Command line interfaces are meant to be easy. So why shouldnt building them be easy, too? HighLine provides a solid toolset to help you get the job done cleanly so you can focus on the real task at hand, your task.
- Clean and intuitive design
- Want to get a taste for how HighLine is used? Take a look at this simple example, which asks a user for a zip code, automatically does validation, and returns the result.
- Hassle-free Installation
- Installation is easy via RubyGems. Simply enter the command: sudo gem install highline and youll be on your way! Of course, manual installation is an option, too.

Enhancements
- Fixed the long standing echo true bug. (reported by Lauri Tuominen)
- Improved Windows API calls to support the redirection of STDIN. (patch by Aaron Simmons)
- Updated gem specification to avoid a deprecated call.
- Made a minor documentation clarification about character mode support.
- Worked around some API changes in Rubys standard library in Ruby 1.9. (patch by Jake Benilov)

Testability-explorer is a tool which analyzes java byte-codes and computes how difficult it will be to write unit-test.
Testability-explorer attempts to help you quantitatively determine exactly how hard the code youve written is to test and, where to focus to make it more testable.
Test metric tool can be used:
- As a learning tool which flags causes of hard to test code with detailed breakdown of reasons.
- To identify hard to test hair-balls in legacy code.
- As part of your code analysis-toolset.
- As a tool which can be added into continuous integration that can enforce testable code.
Currently the tool computes:
- Non-Mockable Total Recursive Cyclomatic Complexity. Cyclomatic Complexity is a measure of how many different paths of execution are there in the code. It is computed, by counting the if, while, and case as branching primitives. It is recursive because cost of the method as well as any methods it calls are counted. It is total because cost of object construction as well as any static initializations are counted. And finally, it is non-mockable because any code which can be mocked out in test is not counted as part of the cost.
- Global Mutable State. Counts the number of fields which are globally reachable by the class under test and which are mutable. (A mutable global state can make testing difficult as tests are not isolatable)
NOTE: Testability-explorer is licensed and distributed under the terms of the Apache License 2.0.

VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running Mac OS X, UNIX, or Windows, is distributed free of charge, and includes source code.
VMD is a molecular graphics program designed for the interactive visualization and analysis of biopolymers such as proteins, nucleic acids, lipids, and membranes.
VMD is a general application for displaying molecules containing any number of atoms and is similar to other molecular visualization programs in its basic capabilities.
VMD includes built-in support for high-end quad-buffered stereoscopic rendering which can be used in projection theatres as well as desktop graphics workstations.
Sterescopic display aids significantly in the perception of three dimensional structures and has been a key feature in VMD since its first release. VMD also provides support for inexpensive game-oriented stereo glasses, and even anaglyphic (Red/Blue) stereo.

Main features:
- No limit on the number of molecules, atoms, residues or number of animation frames, except available memory.
- Many molecular and volumetric rendering and coloring methods.
- Extensive atom selection language with boolean and algebraic operators, regular expressions, distance based selections, and more.
- Extensive graphical and text interfaces to Tcl, Tk, and Python to provide powerful scripting and analysis capabilities.
- High-quality on-screen rendering using OpenGL programmable shading on advanced graphics accelerators.
- Stereoscopic display with shutter glasses, autostereoscopic flat panels, anaglyph stereo glasses, and side-by-side stereo viewing.
- 3-D interactive control through the use of joysticks, Spaceballs, haptic devices and other advanced input devices, with support for Virtual Reality Peripheral Network (VRPN).
- An extensible plugin-based file loading system with support for popular formats such as AMBER, CHARMM, Gromacs, NAMD, PDB, X-PLOR, and many others, as well as automatic conversion through Babel.
- Export displayed scene to extenal rendering formats including POV-Ray, Raster3D, RenderMan, Gelato, Tachyon, Wavefront, as well as STL or VRML2 files for 3-D printing.
- Integration of multiple sequence alignment and evolutionary analysis tools, in the form of the Multiseq plugin and its related toolset.
- Perform interactive molecular dynamics (IMD) simulations using NAMD, Protomol, or other programs as simulation back-ends.
- Integration with the program NAMD, a fast, parallel, and scalable molecular dynamics program developed in conjunction with VMD. See the NAMD page for details: http://www.ks.uiuc.edu/Research/namd
- Integration with the BioCoRE collaborative research environment. VMD can "publish" molecular graphics scripts to BioCoRE, so that collaborators can work together over the internet. See the BioCoRE page for details: http://www.ks.uiuc.edu/Research/biocore.

Version restrictions:
- You have to register in order to download.

Enhancements
- User documentation updates
- Minor improvements and corrections to the VMD Users Guide, added documentation for new commands and environment variables.
- New and updated tutorials available for advanced images and movie making, 3-D PDF export, Tachyon ambient occlusion lighting, electrostatic surface coloring, and density map based atom selections.
- User interface changes
- New "User" picking mode for use with user defined scripts and plugins
- General Improvements
- Support for 3-D capture with Acrobat 3-D, for creation of documents which embed 3-D molecular structures.
- VMD renderings can now use Tachyons advanced ambient occlusion lighting for tremendously improved 3-D renderings of molecular graphics. This advanced lighting mode can greatly enhance the shading of pores and channels, structures with cavities, and other cases which typically require the use of depth cueing for better depth perception.
- VMD now supports the nVidia "Gelato" GPU-accelerated production quality rendering package. VMD exports scenes in Gelatos native PYG file format, as well as the RenderMan RIB format.
- By default VMD will now use all of the available processors to accelerate parallelized portions of the code which currently include several structure analysis routines, Interactive MD, and ray tracing.
- Overall per-atom memory use has been significantly decreased. VMD now uses just over half as much memory per atom compared with previous versions, leaving more space available for additional trajectory frames or for more molecules to be loaded at once.
- VMD structure loading and analysis scalability have been significantly improved. VMD has been successfully tested loading and analyzing structures of up to 72,000,000 atoms.
- Automatic bond determination algorithm now runs up to 3 times faster on single processor systems, and uses multiple processors for improved performance on multicore processors and multiprocessor workstations.
- Drastically improved multi-thousand-file structure loading performance when display update is disabled. This benefits batch mode VMD analysis jobs involving analysis of thousands of structures, e.g. loading and searching large subsets of the PDB.