sequence processor
Sonnet Processor 3.1
Sonnet Processor - Installs files necessary to support various Sonnet processor upgrades in the listed applicable computers more>>
Sonnet Processor installer will also install (or updates) the Startup Disk X control panel, and will move the original Startup Disk Control Panel to the Control Panels (Disabled) folder. This control panel enables universal switching between Mac OS 9.x and Mac OS X System Folders on systems where Mac OS X has already been installed.
Note: If you have altered the extension name (ie: added spaces to the file name) of a previously installed version of Crescendo, Sonnet Processor Upgrade, or Encore, this installer will not automatically remove the previous version. You must manually remove it from your Extensions Folder.
Applies to Following Computers:
Apple Macintoshes
- Performa 5400, 5410, 5420, 5430, 5440, 6110, 6112, 6115, 6116, 6117, 6118, 6360, 6400, 6430, 6440
- PowerBook 1400 Series
- Power Macintosh 4400, 5400, 5500, 6100, 6400, 6500, 7100, 7220, 7300, 7500, 7600, 8100, 8115, 8500, 8515, 8600, 9500, 9515, 9600
- Power Macintosh G3 All-in-one, Blue & White, Desktop, Minitower, Server
- Power Macintosh G4
- Twentieth Anniversary Macintosh
- Workgroup Server 6150, 7350, 8150, 8550, 9150, 9650
Mac OS Clones
- DayStar Genesis and Millennium Series
- MacTell XB-Pro
- Power Computing Power 100, 120, PowerBase, PowerCenter, PowerCenter Pro, PowerCurve, PowerTower, PowerTower Pro, PowerWave
- Radius System 100, 81/110
- StarMax 3000, 4000, 5000, 5500
- UMAX C500, C600, C600X, J700, S900
Enhancements:
- Version 3.1 is the same as Version 3.0, which added support for Encore/MDX G4 Duet processor upgrades.

Bean Word Processor 2.3
Small, fast word processor. more>>
A small, easy-to-use word processor (or more precisely, a rich text editor), designed to make writing convenient, efficient and comfortable. Bean is Open Source, fully Cocoa, and is available free of charge! Features: live word count, inspector panel, full screen mode, find and replace with regular expressions.
Privilege Processor 0.9b
Privilege Processor - Change files and folders privileges more>>
It allows the user to change access privileges and Unix group by dragging and dropping, or via a sequence of dialog boxes.
Privilege Processor stores preferences as AppleScript properties. Once you have set the preferences the way you want them, you can drag-and-drop files and folders onto the applications icon to change their privileges.
Main features:
- change privileges by drag-and-drop;
- works on files and folders;
- change groups (admin and staff only);
- uses standard Mac OS privilege concepts, not the more complex Unix permissions;
- change privileges for multiple files and/or folders at once.
Sequence Analysis 1.6
Sequence Analysis - DNA/protein sequence analysis more>>
This (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.
Enhancements:
- Fixed launching conflict introduced with QuickTime 7.0.4
- Digest: Using "REBase 601" enzyme list
- Allow launching with Java 5 (JDK 1.5).
License:Freeware

Sequence 2.1.1
Sequence offers you a very useful tool which is able to capture and save an image or a movie of your screen to your computers clipboard, or a file (in an image format of your choice). more>>
Sequence 2.1.1 offers you a very useful tool which is able to capture and save an image or a movie of your screen to your computer's clipboard, or a file (in an image format of your choice). A video or screenshot can be emailed, uploaded on the web, or passed around however you want. Using a multithreaded code and a 64-bit enabled compression system, Sequence can handle capturing DVD, audio, or any other multimedia application. Sequence is powerful enough to simultaneously record from your webcam and your screen.
With the voice recording function, you can easily describe what you are doing on your screen. Simply use your Mac's built-in microphone. With Sequence, its easy to make training videos, product demos, create tutorials, archive streaming video, the possibilities are endless! For instance, you could easily help your friends and family learn more about their computers. No need for boring and complicated documentation!
With Sequence you can give clear and precise explainations, including mouse movements and keyboard entries. Sequence supports saving screenshots as bmp, pict, gif, jpg, png, tiff, pdf. Sequence was built for Mac OS X Leopard, using the best of Mac OS X technologies: Core Animation, QuickLook, QTKit, Core Image, iChat Theater, etc.
Major Features:
- Universal Binary
- This product is compiled as a universal binary. Coinciding with apple's release of Intel-based computer systems, this will allow the product to run on any Macintosh, containing either a PowerPC chip or an Intel chip, without any speed slowdown, or program emulation.
- Modern Code
- Built from the ground up in Cocoa and Objective C, this product supports numerous Mac OS X technologies that include: animation, sheets and help tips.
- The Right Price
- All purchases of the applications include free updates / upgrades, forever!
- Offer great volume discounts if you purchase multiple licenses.
- Those purchasing the applications for the educational sector can receive a 20% discount coupon code and, since are a French company, all US and international purchases are automaticaly tax exempt.
- Strong Customer Support
- Are always here to help whenever you need. Send an email with any questions you may have or visit the support website to browse Frequently Asked Questions
- Staying In Touch
- Love hearing from all of the customers, new and old. Let know what you're up to and will do the same!
- This product works because it's built by people like you for people like you. Need a feature? Request it.
Enhancements:
- Support of Mac OS X 10.6 Snow Leopard
- Bug fixed with user license and some proxy servers
CLC Sequence Viewer 6.2
CLC Sequence Viewer is a freeware that creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. more>>
CLC Sequence Viewer 6.2 is a freeware that creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.
Major Benefits:
- You will have easy access to a large number of integrated research tools:
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- Creating and editing alignments
- Interactive restriction site analysis
- Phylogenetics
- Integrated GenBank searches
- Advanced DNA to Protein translation
- You can get easy access to hardware accelerated database searches
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- Plug in the Bioinformatics Cube and increase your search speed up to 200 times
- Your research work will be easy to carry out
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- The program is graphically based, intuitive, and user-friendly
- You will have a bioinformatics solution that continuously evolves
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- The frequent program updates keep you up to date with the latest scientific developments. Your ideas for future improvements will have top priority.
- You will get superior customer service
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- Free support to all users.
- Free support to all users.
Major Features:
- Bioinformatics features in CLC Sequence Viewer
- Multiple alignment of DNA, RNA, and proteins
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- Two proprietary algorithms
- ClustalW
- Muscle
- T-Coffee
- MAFFT
- Kalign
- Consensus sequence determination and management
- Conservation score along alignments
- Open reading frame determination
- Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice
- Translation from DNA to proteins (all genetic translation tables)
- Reports with residue composition, molecular weight and iso electric point (for proteins)
- Neighbor-joining and UPGMA phylogenies
- Restriction site analysis and viewing
- Create reverse complement
- Shuffle sequence
- Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio
- Other features in CLC Sequence Viewer
- Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases
- All types of files can be saved in local projects and launched from the program
- Detailed history log
- User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences
- Text-based sequence view
- Easy printing of reports and graphics
- Export of user-defined figures to various graphics file formats
- Import and export of data in a large number of file formats
- Option of working with different files and in different file projects at the same time
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
Enhancemnets:
- New features:
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- Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
- Advanced view of elements in a folder including batch editing.
- Extract sequences improvements
- You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
- "Find" in text view now accepts Enter as command to find the next hit
- Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
- Export of annotations in GFF format (note that annotations with joined regions are not supported)
- Bug fixes:
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- Problem rendering scatter plots without lines
- DNA strider files could loose name upon import
- Rare misplacement of annotations when editing very large sequences
- Various bug-fixes
License:Freeware
License:Freeware
Quick Sequence Diagram Editor 3.0.5
A tool for generating professional UML sequences more>>
Enhancements:
- Allows to hide return arrows
- Makes scrolling the text area faster
- Fixes two bugs
QXP Process Droplet 2.0
QXP Process Droplet - Batch processor for QuarkXPress files more>>
When saved as a droplet QXP Process Droplet will process files or folders of files dragged onto it.
Completly freeware.
Raw Photo Processor 3.9.9
Raw Photo Processor is released to be a simple-to-use and creative RAW converter, supporting almost all available digital RAW formats. more>>
Raw Photo Processor 3.9.9 is released to be a simple-to-use and creative RAW converter, supporting almost all available digital RAW formats. Think of it as of a development machine in terms of film photography - first you have to develop your roll right, then do whatever you want with it. So this is NOT a full featured photo processing package, you will need Photoshop or some other tool to apply sharpness, cropping and so on, but you may use RPP for some very carefully picked amount of operations.
The main idea behind this application is to do quality conversion without blocking shadows, clipping highlights, spoiling colors and returning that natural film-like look to your pictures.
Enhancements:
- Added support for Canon S90.
- Black point in output files should always be 0 now (before it could be higher for some cameras). This change affects all cameras, so please report if you see unexpected clipping in shadows or highlights.
- Bugfix in preview for monochrome modes.
License:Freeware
License:Freeware
SMIL Sequence Wizard 1.0
SMIL Sequence Wizard - Create SMIL sequences of QT movies more>>
This is perfect for any ad insertions in a web page. All you need to do is run the script and answer the questions.
Link Sequence Downloader QED 0.21
Link Sequence Downloader QED is a good tool possessing desirable qualities in downloading a series of files, such as images and videos, to your hard-drive. more>>
Link Sequence Downloader QED 0.21 is a good tool possessing desirable qualities in downloading a series of files, such as images and videos, to your hard-drive.
By entering a link, with ranges in square brackets - a large list of files can be downloaded in one go. For example, the Link Sequence: http://www.example.com/videos/[1-10]/vid[001-004].mpg would attempt to download forty mpeg video files; four files named vid001.mpg, vid002.mpg, vid003.mpg, vid004.mpg from each of ten folders numbered 1 to 10.
Advanced Renicer 1.0
Advanced Renicer - Reduce the possibilty of processor bottlenecks more>>
Completly freeware.
Protein Sound
Protein Sound is an amazing applet and stand-alone for playing protein sequences as sounds. more>>
Protein Sound is an amazing applet and stand-alone for playing protein sequences as sounds. It's in its infancy, but you have to change to the 'Midi Synthesizer' tab and enter some protein sequence in the 'Protein Reader' text field at the top and then click 'Read'.
Here's the source and binaries:
- Source: proteinreader.tar.gz
- Binary: proteinreader.jar
Adobe Photoshop G5 Processor Plug-in 7.0.1
Adobe Photoshop G5 Processor Plug-in is designed to optimize Adobe Photoshop 7.0.1 is designed to optimize Adobe® Photoshop® 7.0.1 for use with the Apple Power Macintosh G5 processor more>> Adobe Photoshop G5 Processor Plug-in is designed to optimize Adobe Photoshop 7.0.1 is designed to optimize Adobe® Photoshop® 7.0.1 for use with the Apple Power Macintosh G5 processor. It makes the following changes to an existing Photoshop 7.0.1 installation:
- Modifies many Photoshop operations to fully utilize the G5 processor capabilities
- Replaces the Adobe Color Engine component (ACECarbonLib) with a new version that is designed for the G5 processor
PowerPC G5, Mac OS X 10.2 or later, Adobe Photoshop 7.0.1 or later.
Resistulator 0.1
Resistulator - A resistor calculator more>>
Instructions:
To enter a color sequence, click each colored band to cycle through the possible colors. You can look up a color sequence by entering the numeric resistor value from the dropdown menus when the widget is in expanded form. The widget is resized by clicking anywhere on the green background.