protein
Protein Sound
Protein Sound is an amazing applet and stand-alone for playing protein sequences as sounds. more>>
Protein Sound is an amazing applet and stand-alone for playing protein sequences as sounds. It's in its infancy, but you have to change to the 'Midi Synthesizer' tab and enter some protein sequence in the 'Protein Reader' text field at the top and then click 'Read'.
Here's the source and binaries:
- Source: proteinreader.tar.gz
- Binary: proteinreader.jar
ProteinShop 3.1
ProteinShop is an interactive tool for manipulating protein structures more>>
CLC Protein Workbench 5.2
CLC Protein Workbench is designed for providing a wide range of advanced protein analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. more>> <<less
CLC bio A/S - Advanced protein sequence anayses. CLC Protein Workbench. CLC Protein Workbench 5.1 is a useful toolCLC Protein Workbench brings an advanced program which is capable of providing a wide range of advanced protein analyses, and is basedProtein BLAST Widget 1.0
Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used more>>
Requirements:
- Mac OS X 10.4 or later.
Protein BLAST Widget is designed to be a helpful tool which can provide a quick access to the Protein Basic Local Alignment Search Tool at NCBIDNA/Protein Converter 1.0
DNA/Protein Converter is a widget to convert sizes between DNA and protein. more>>
DNA/Protein Converter 1.0 is a widget to convert sizes between DNA and protein.
DNA/Protein Converter Widget 1.0
The DNA/Protein Converter widget allows to perform size conversions between DNA and protein more>>
Requirements:
- Mac OS X 10.4 or later.
Protein Molar Converter Widget 1.1
Protein Molar Converter Widget - Molar conversions for proteins more>>
Enhancements:
- You can now perform conversions from the protein size field.
ProteinID Finder Lite 1.7.0
ProteinID Finder Lite is designed to be a proteomics analyzation software with the ability of extracting information from the online universal protein resource database UniProt. more>>
ProteinID Finder Lite 1.7.0 is designed to be a proteomics analyzation software with the ability of extracting information from the online universal protein resource database UniProt.
ProteinID Finder imports your mass spectrometer analyzed protein lists (uniprot accession numbers) into experiments and organizes your proteomics experiments into workspaces. You can share workspaces with your collaborators so everyone is working on the same data.
ProteinID Finder can compare multiple experiments and identify trends or similarities between experiments, a powerful tool to identify potential biomarkers.
ProteinID Finder Lite 1.7.0 version is suitable for:
- Evaluation
- Beginners learning ProteinID Finder
- Experiments with few proteins
- Alternative interface to Uniprot's database
Major Features:
- Very low price
- Unlimited workspaces
- Unlimited views
- 2 experiment per workspace
- Max 10 proteins per experiment
- Export result in tab delimited format
Enhancements:
- Workspaces, queries and views are automatically kept current with Uniprot's latest database release.
- Integrated feedback system, where you can submit bug reports or request new features
- Extract user specific information from Uniprot's database with the new Query Designer tool.
- Build custom output reports of multiple queries with the new View Builder tool.
- Share queries and views with other users and collaborators.
- Analyzation engine has been optimized to support up to 10,000 proteins with unprecedented speed.
- ProteinID Finder runs on Windows 7, Vista and Mac OS X Snow Lepoard.
- ProteinID Finder now has an integrated feedback system, where you can submit bug reports or request new features.
Requirements:
- Operating System: OS X 10.3.9 or newer Universal build (PowerPC or Intel)
- Display resolution: 1024x768 or larger
- RAM (minimum): 512 MB
- Hard disk space (minimum): 100 MB
- Internet Connection: Broadband connection
Protein Family Alignment Annotation Tool 1.0.123
Protein Family Alignment Annotation Tool - Protein analysys tool more>>
Key features of Pfaat include the ability to align collections of sequences, cluster and/or group sequences into subfamilies, analyze sequences based on a number of similarity criteria, visualize protein structure, and annotate sequences and specific residue positions with text descriptions.
Protein Family Alignment Annotation Tool offers you an ability to facilitate the analysis, curationProtean 7.0
Protean is designed as a sophisticated program which allows you to predict and display patterns, secondary structural characteristics and physicochemical properties of protein sequences more>>
Protean 7.0 is designed as a sophisticated program which allows you to predict and display patterns, secondary structural characteristics and physicochemical properties of protein sequences via its comprehensive suite of protein analysis tools. Protean's simple, elegant graphical user interface can also help you locate antigenic determinants and predict protease digestion patterns.
When you find interesting structures, you can utilize the integrated BLAST tool* to search NCBI's databases for related sequences using all or part of your polypeptide as the query. Protean also provides you with the tools to easily annotate and export your findings as reports, pictures or tables.
Requirements: Mac OS X 10.1 or higher (10.2 recommended)
Protean Updater 7.0
Protean Updater - Protein structure prediction and annotation tool more>>
Proteans simple, elegant graphical user interface can also help you locate antigenic determinants and predict protease digestion patterns. When you find interesting structures, you can utilize the integrated BLAST tool* to search NCBIs databases for related sequences using all or part of your polypeptide as the query.
Protean also provides you with the tools to easily annotate and export your findings as reports, pictures or tables.
ProtParam 1.1
ProtParam - Computes physico-chemical parameters for your protein sequences more>>
You just have to type or paste your sequence in the input field.
This widget is free for all users. Download it now !
Enhancements:
- The search field was improved.
ProtParam Widget 1.1
ProtParam Widget can be seen as a helpful tool which brings physico-chemical parameters for your protein sequences at ExPASy. more>>
ProtParam Widget 1.1 can be seen as a helpful tool which brings physico-chemical parameters for your protein sequences at ExPASy. You just have to type or paste your sequence in the input field.
The ProtParam widget computes physico-chemical parameters for your protein sequences at ExPASy. You just have to type or paste your sequence in the input field. Requirements: Mac OS X 10.4 or
CRONoMeter 0.9.5
CRONoMeter is a mighty efficacious program that can provide diet advice, track consumption and exercise, and generally assist in all aspects of a CR diet. more>> CRONoMeter 0.9.5 is a mighty efficacious program that can provide diet advice, track consumption and exercise, and generally assist in all aspects of a CR diet. CR (Calorie Reduced) diets require a lot of information to perform optimally. In order to restrict caloric intake, but remain healthy, users of the diet must track their vitamin, mineral, and protein intakes with great care.
It's a complete solution to the CR dieter. Current open-source diet-tracking applications fall short in some vital respects. Either they are not detailed enough, or they suffer from critical usability flaws. We believe that a diet tracker must be effortless to operate for the activity for which it will be used most of the time, keeping track of the foods eaten in a particular meal.
Translate widget 0.7
Translate widget - DNA/Protein conversions, sequence scrambler and more more>>
Translate widget is a DNA/protein conversion and manipulation widget.
Translates (DNA to protein), reverse translates (protein to DNA), makes antisense strand, formats sequence, scrambles sequences.
Main features:
- Translate DNA -> Proteins
- Reverse translate protein -> DNA
- Format sequences
- Scramble sequences
- Make antiparallel (complementary) strand.
Enhancements:
- Bug fix - can now generate antiparallel with "N"s.
