pro 5 protein
Protein Sound
Protein Sound is an amazing applet and stand-alone for playing protein sequences as sounds. more>>
Protein Sound is an amazing applet and stand-alone for playing protein sequences as sounds. It's in its infancy, but you have to change to the 'Midi Synthesizer' tab and enter some protein sequence in the 'Protein Reader' text field at the top and then click 'Read'.
Here's the source and binaries:
- Source: proteinreader.tar.gz
- Binary: proteinreader.jar
CLC Protein Workbench 5.2
CLC Protein Workbench is designed for providing a wide range of advanced protein analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench. more>> <<less
Advanced protein sequence anayses. CLC Protein Workbench 5.1 - CLC ...CLC Protein Workbench 5.1 is a useful tool which provides a wide range ofCLC Protein Workbench brings an advanced program which is capable ...CLC Protein Workbench 5.0.2 brings an advanced program which is capableProteinShop 3.1
ProteinShop is an interactive tool for manipulating protein structures more>>
Protean 7.0
Protean is designed as a sophisticated program which allows you to predict and display patterns, secondary structural characteristics and physicochemical properties of protein sequences more>>
Protean 7.0 is designed as a sophisticated program which allows you to predict and display patterns, secondary structural characteristics and physicochemical properties of protein sequences via its comprehensive suite of protein analysis tools. Protean's simple, elegant graphical user interface can also help you locate antigenic determinants and predict protease digestion patterns.
When you find interesting structures, you can utilize the integrated BLAST tool* to search NCBI's databases for related sequences using all or part of your polypeptide as the query. Protean also provides you with the tools to easily annotate and export your findings as reports, pictures or tables.
Requirements: Mac OS X 10.1 or higher (10.2 recommended)
Protein BLAST Widget 1.0
Protein BLAST Widget is designed to be a helpful tool which can provide a quick access to the Protein Basic Local Alignment Search Tool at NCBI. more>>
Protein BLAST Widget 1.0 is designed to be a helpful tool which can provide a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool ... brings you a fast access to the Protein Basic Local Alignment Search Tool at NCBI. You just haveProtean Updater 7.0
Protean Updater - Protein structure prediction and annotation tool more>>
Proteans simple, elegant graphical user interface can also help you locate antigenic determinants and predict protease digestion patterns. When you find interesting structures, you can utilize the integrated BLAST tool* to search NCBIs databases for related sequences using all or part of your polypeptide as the query.
Protean also provides you with the tools to easily annotate and export your findings as reports, pictures or tables.
DNA/Protein Converter 1.0
DNA/Protein Converter is a widget to convert sizes between DNA and protein. more>>
DNA/Protein Converter 1.0 is a widget to convert sizes between DNA and protein.
DNA/Protein Converter Widget 1.0
The DNA/Protein Converter widget allows to perform size conversions between DNA and protein more>>
Requirements:
- Mac OS X 10.4 or later.
Protein Molar Converter Widget 1.1
Protein Molar Converter Widget - Molar conversions for proteins more>>
Enhancements:
- You can now perform conversions from the protein size field.
ProteinID Finder Lite 1.7.0
ProteinID Finder Lite is designed to be a proteomics analyzation software with the ability of extracting information from the online universal protein resource database UniProt. more>>
ProteinID Finder Lite 1.7.0 is designed to be a proteomics analyzation software with the ability of extracting information from the online universal protein resource database UniProt.
ProteinID Finder imports your mass spectrometer analyzed protein lists (uniprot accession numbers) into experiments and organizes your proteomics experiments into workspaces. You can share workspaces with your collaborators so everyone is working on the same data.
ProteinID Finder can compare multiple experiments and identify trends or similarities between experiments, a powerful tool to identify potential biomarkers.
ProteinID Finder Lite 1.7.0 version is suitable for:
- Evaluation
- Beginners learning ProteinID Finder
- Experiments with few proteins
- Alternative interface to Uniprot's database
Major Features:
- Very low price
- Unlimited workspaces
- Unlimited views
- 2 experiment per workspace
- Max 10 proteins per experiment
- Export result in tab delimited format
Enhancements:
- Workspaces, queries and views are automatically kept current with Uniprot's latest database release.
- Integrated feedback system, where you can submit bug reports or request new features
- Extract user specific information from Uniprot's database with the new Query Designer tool.
- Build custom output reports of multiple queries with the new View Builder tool.
- Share queries and views with other users and collaborators.
- Analyzation engine has been optimized to support up to 10,000 proteins with unprecedented speed.
- ProteinID Finder runs on Windows 7, Vista and Mac OS X Snow Lepoard.
- ProteinID Finder now has an integrated feedback system, where you can submit bug reports or request new features.
Requirements:
- Operating System: OS X 10.3.9 or newer Universal build (PowerPC or Intel)
- Display resolution: 1024x768 or larger
- RAM (minimum): 512 MB
- Hard disk space (minimum): 100 MB
- Internet Connection: Broadband connection
CRONoMeter 0.9.5
CRONoMeter is a mighty efficacious program that can provide diet advice, track consumption and exercise, and generally assist in all aspects of a CR diet. more>> CRONoMeter 0.9.5 is a mighty efficacious program that can provide diet advice, track consumption and exercise, and generally assist in all aspects of a CR diet. CR (Calorie Reduced) diets require a lot of information to perform optimally. In order to restrict caloric intake, but remain healthy, users of the diet must track their vitamin, mineral, and protein intakes with great care.
It's a complete solution to the CR dieter. Current open-source diet-tracking applications fall short in some vital respects. Either they are not detailed enough, or they suffer from critical usability flaws. We believe that a diet tracker must be effortless to operate for the activity for which it will be used most of the time, keeping track of the foods eaten in a particular meal.
ProtParam 1.1
ProtParam - Computes physico-chemical parameters for your protein sequences more>>
You just have to type or paste your sequence in the input field.
This widget is free for all users. Download it now !
Enhancements:
- The search field was improved.
ProtParam Widget 1.1
ProtParam Widget can be seen as a helpful tool which brings physico-chemical parameters for your protein sequences at ExPASy. more>>
ProtParam Widget 1.1 can be seen as a helpful tool which brings physico-chemical parameters for your protein sequences at ExPASy. You just have to type or paste your sequence in the input field.
chemical parameters for your protein sequences at ExPASy. You just have to type or paste your ... parameters for your protein sequences at ExPASy. You just have to type or paste your sequence inAvogadro 0.9.5
Advanced molecular editor designed for use in computational chemistry, molecular modeling, bioinformatics and others more>> Advanced molecular editor designed for use in computational chemistry, molecular modeling, bioinformatics and others
Avogadro is a free and open source advanced molecular editor designed for cross-platform use in molecular modeling, computational chemistry, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture.
The main concept behind Avogadro is to enable a strong framework for molecular visualization and editing. Each community has their own needs and goals for an ideal tool.
So Avogadro seeks to allow users to easily provide their own scripts and plugins for rendering, commands, tools... etc.
Avogadro is based on top of existing chemistry software, including Open Babel. In the future, it will offer strong scripting abilities to allow for automated demos, submission of calculations to local computational resources, and user-defined customization.
NOTE: This release is an early beta release and is intended to gain feedback and interest in the project.
Main features:
- Cross-platform molecular builder/editor.
- Plugin architecture for developers, including rendering, interactive tools, commands, and Python scripts.
- Built-in molecular mechanics (including MMFF94 and UFF).
- Input generation for Gaussian and GAMESS-US, with more packages to come.
- Support for crystallographic unit cells.
- Visualization of iso surfaces and orbitals, including Gaussian cubes, OpenDX, and Gaussian fchk files.
- Translations into French and German.
System requirements:
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- OpenBabel 2.2.0 or later.
- Eigen 2.0.0 Beta 3 or later.
Enhancements
- General
- More build system improvements - external plugins can easily be built against libavogadro on Linux and Mac.
- Includes a standard Mac "app bundle" -- completely relocatable disk image
- Added a check for updated versions of Avogadro on the network (e.g., when 0.9.6 or 1.0 is released)
- Includes improved translations and localization, including localized numbers everywhere and a full translation in Indonesian
- More bugs found and fixed.
- Interface
- Updated interface allows more screen space for drawing / viewing
- Tools moved to a new toolbar
- Tool and Display Settings appear on demand
- Updated keyboard shortcuts for switching tools
- Keyboard shortcuts for switching elements in the Draw tool: type the element symbol (e.g., Fe for iron)
- Visual cues can now be disabled for the navigation tool
- Moved "insert fragment" to Build menu
- Rendering
- Significantly improved protein "Cartoon" display type
- Added a custom color option
- Display of forces from geometry optimization is fixed (was broken in previous 0.9 releases)
- Extensions
- Added "Insert Peptide" builder for oligopeptides.
- Added visualization of NMR spectra.
- Atom, bond, angle, and torsion property tables now allow editing. This means you can now set a bond length, angle or dihedral exactly.
- Allow sorting of property tables for each column.
- Improved vibration plugin, fixing many bugs, and smoothing the animation.
- Added syntax highlighting for GAMESS-US.
- Now can run local Gaussian 03 jobs.
4Peaks Plugin SDK 1.1
4Peaks Plugin SDK - Make plugins for 4Peaks more>>
Generate plugins that are automatically downloaded from the internet and dynamically loaded, without restarting 4Peaks. We invite everyone to download the SDK and contribute in improving 4Peaks. Make the best sequence trace viewer for the Mac even better!
By making a plugin, you can get 4Peaks to send your sequence to websites for analysis, get it to find and highlight sequence features on your trace, or, by integrating AppleScripts into your plugin, send the sequence on to a different program on your own machine for further analysis.
This SDK contains all the files to develop 4Peaks plugins in no-time, from simple interfaces to available internet-based analysis programs like BLAST and Primer3, to complex analysis programs to search for sequence patterns and protein features.
Enhancements:
- Universal binary.
