algorithm visualization

Visifire 2.2.8b3
Visifire 2.2.8b3 is known as a set of open source data visualization components - powered by Microsoft Silverlight that can help you create and embed visually stunning animated Silverlight Charts within minutes. more>> <<less
License:Freeware
License:Freeware
License:Freeware
License:GPL
License:Freeware
License:GPL
OsiriX 3.6.1
OsiriX offers an innovative, versatile image processing software dedicated to DICOM images produced by medical equipment (MRI, CT, PET, PET-CT, ...) and confocal microscopy (LSM and BioRAD-PIC format). more>>
OsiriX 3.6.1 offers an innovative, versatile image processing software dedicated to DICOM images produced by medical equipment (MRI, CT, PET, PET-CT, ...) and confocal microscopy (LSM and BioRAD-PIC format). It can also read many other file formats: TIFF (8,16, 32 bits), JPEG, PDF, AVI, MPEG and Quicktime. It is fully compliant with the DICOM standard for image comunication and image file formats. OsiriX is able to receive images transferred by DICOM communication protocol from any PACS or medical imaging modality (STORE SCP - Service Class Provider, STORE SCU - Service Class User, and Query/Retrieve) .
OsiriX has been specifically designed for navigation and visualization of multimodality and multidimensional images: 2D Viewer, 3D Viewer, 4D Viewer (3D series with temporal dimension, for example: Cardiac-CT) and 5D Viewer (3D series with temporal and functional dimensions, for example: Cardiac-PET-CT). The 3D Viewer offers all modern rendering modes: Multiplanar reconstruction (MPR), Surface Rendering, Volume Rendering and Maximum Intensity Projection (MIP). All these modes support 4D data and are able to produce image fusion between two different series (for example: PET-CT).
Osirix is at the same time a DICOM PACS workstation for medical imaging and an image processing software for medical research (radiology and nuclear imaging), functional imaging, 3D imaging, confocal microscopy and molecular imaging.
Osirix supports a complete plug-ins architecture that allows you to expand the capabilities of OsiriX for your personal needs! This plug-in architecture gives you access to the powerfull Cocoa framework with an easy object-oriented and dynamic language: Objective-C.
Enhancements:
- Certified for Snow Leopard compatibility (MacOS 10.6)
- New 'AutoCropping Algorithm' technology in 3D VR/MIP -> Between 20% to 100% faster rendering speed
- minIP for 3D MPR
- C-GET SCU/SCP (Dynamic IP address DICOM transfers)
- Settings for compression per modality
- JP2000 compression support, with quality level option
- Support for OpenJPEG JPEG2000 encoding
- OpenJPEG is 2.2x times faster : OpenJPEG is now faster than JasperLib see all new features

checkSum+ 1.5.3
checkSum is able to create/read files in sfv, md5 and csv which are used to check for data loss on file transmission over newsgroups, CD burn and so on, based on md5 or CRC32 algorithm and tell you (or others) when a file is or not corrupted. more>> <<less

ArKaos MediaMaster 1.1
ArKaos MediaMaster 1.1 is a helpful software that gives you control to 8 layers of high definition video to the lighting design industry. more>>
ArKaos MediaMaster 1.1 is a helpful software that gives you control to 8 layers of high definition video to the lighting design industry. With its state-of-the-art video mixing engine, support for high resolution output, LED panel integration and full DMX support, it proves you don't need to ruin yourself to integrate video performances to your light show.
Since MediaMaster's extensive fixture is supported by most console manufacturer, you're directly in control!
Major Features:
- 8 independent video layers
- Advanced Graphic engine: Fully hardware accelerated and Multi-threaded on multi-core CPUs
- Optimized for HD movies, HD output support
- Internal MPEG2-MPEG4 codec for enhanced reliability
- Intuitive user interface
- 60+ effects
- 50+ text animations
- Audio Visualization Generators
- Media library of 255 folders and 255 visuals
- Multiple video inputs (PCI card, FireWire DV / HDV, USB, etc.)
- Total control of your media: 3D position/ rotation, movie speed, color levels etc.
- Master brightness-contrast, keystone
- Multi-Screen and Wide-Screen with soft-edge
- MSEX Compatible: thumbnails preview and live output on your MSEX compatible lighting desk
- Windows XP, Vista and Mac OSX compatible
- 3 available fixtures: micro, tiny and full
- Support of all common media formats (AVI, MPEG, QuickTime MOV, Flash, WMV, picture files etc)
Enhancements:
- Software Genlocking to the output monitors for perfect playback up to 60fps without dropping frame
- Frame blending for smooth playback even at very slow speed
- Improved soft-edging algorithm
- Support for movies with alpha channels
- Build-in support for grandma MA-Net
- Native support of H.264 through FFMPEG 0.5
- New Cropping effect
Requirements:
- OS: Mac OS X 10.4 (and up).
- Processor: Any Intel Mac, G4/1Ghz (and up).
- RAM: 512MB, 1GB recommended.
- Media Component: QuickTimeTM 6.5.x (and up), Adobe FlashPlayerTM 9.0 (and up).

RightWebPage 0.13.1
RightWebPage is such an advanced software that verifies and corrects many aspects of conformance of Web sites to standards of Internet best practices more>>
RightWebPage 0.13.1 is such an advanced software that verifies and corrects many aspects of conformance of Web sites to standards of Internet best practices such as W3C WCAG and ISO/IEC 23026:2006 - Software Engineering - Recommended Practice for the Internet - Web Site Engineering, Web Site Management, and Web Site Life Cycle.
Major Features:
- Verification of a single page or entire web site at your option;
- HTML Validation against W3C DTDs and WHATWG (X)HTML5 pre-release schemas;
- Automatic checking and correction of many aspects of conformance to international best practices;
- Visualization of a snapshot with a given character encoding (the user agent is also chosen in order to present the specific version originally intended to be seen in a given web browser);
- Complete verification of links. Even the redirections to a custom error page are detected by a special algorithm;
- Automatic correction of missing widths and heights of images to enable better responsiveness of web pages;
- Automatic correction of missing meta tags elements like default language and metadata;
- Support for web pages in Chinese, Japanese, Korean and many other languages.
- Performance optimization for multi-core processors.
- Validation during navigation.
- Application of standards during revalidation.
- Memory revalidation with no need to make all corrections of a web page at once (users may correct small portions of the code and see the results pressing F5)..
- HTML Tidy accessibility check.
- Balloon tooltips for contextual help.
- Recursive validation for frames.
- Proxy support.
- Web inspector with javascript debugger.
Enhancements:
- Due to unsatisfied dependencies, a crash in previous release for Mac was fixed
Visualization of a snapshot with a given character encoding (the user agent is also chosen in ... custom error page are detected by a special algorithm; Automatic correction of missing widthsLicense:Freeware
TracGViz 1.3.4
TracGViz is a complete and useful package (plugin) which provides components so that Trac be able to use widgets and related technologies offered by Google. more>>
TracGViz 1.3.4 is a complete and useful package (plugin) which provides components so that Trac be able to use widgets and related technologies offered by Google.
Major Features:
- It allows to feed data managed by Trac to widgets based on Google Visualization API.
- It allows embedding iGoogle Gadgets in wiki pages using WikiFormatting.
Enhancements:
- New ! GVizQuickJumpEntries offers data about interesting places in the repository (a.k.a. quick jump entries). This includes tags and branches, for instance. The data is provided by VersionControlRPC.
- Bug fixed: Formerly all revisions were included in the revision log if only individual revisions were requested. Now the result sets include just the information for the particular changesets supplied in rev parameter. Tested with both hg and svn.
- Bug fixed: Exception with message Invalid list index was raised when using Subversion backend when requesting the log for individual revisions. This works OK now for both hg and svn.
- Bug fixed: Wrong default value for fmt parameter in GVizChangesetDetails. Now it's OK.
- Bug fixed: Formerly undocumented column in GVizTimelineFilters provider now contains appropriate description.
- WikiFormatting may be used to document the data sources. It may be included in the documentation written for parameters, columns, and the data source itself.
- Bug fixed: Documentation for providers having dynamic schemas was not previously rendered. This has been fixed and a new property has been added in docs to highlight whether the data source returns always the same columns or if they can vary depending upon run-time conditions.
- Milestones may be filtered by name by providing a UNIX pattern in filter_by parameter.
- UNIX filename patterns are compiled using REs for better performance.
- Bug fixed: When using Hg backend, the code in version 1.3.3 in order to revisions iterator (VCS RPC) entered infinite loop (under certain conditions apparently related to branching or version numbers). This doesn't happen anymore.
- Bug fixed: Now VCS RPC retrieves all changesets when using Hg backend. The implementation doesn't guess anymore the revision order and retrieves all that information directly from the underlying VCS connector in use. The former algorithm was weak because it only considered the first parent of a given revision. Therefore many others (especially all those in different branches) were missing from the result set.
- Individual revisions (and not just intervals like before) may be selected in GVizChangesets (i.e. to obtain the revision log).
- Bug fixed: As a consequence of the changes introduced in version 1.3.3 (especially in ReportRPC and VersionControlRPC) together with bug #5586@TH.org in XmlRpcPlugin, made impossible to render the main displaying documentation about the different RPC handlers. Both docstrings have been modified and everything is back to normal right now.
LightWorks 8.1
Full featured CAD application. more>>
LightWorks 8.1 is a powerful tool which is designed to provide you with full featured CAD application.
LightWorks is the industry's leading rendering engine for 3D design, renowned for its physically accurate visualization of CAD data and for simulating real-world lighting conditions and materials.
visual-db 0.5
Database visualization tool for your Mac VisualDB is a tool for visualization of the database as tables with relations between them more>> Database visualization tool for your Mac
VisualDB is a tool for visualization of the database as tables with relations between them. At this point the developmnet focuses on PostgreSQL, but in the future we are planning on supporting other DBMS, such as MySQL, Oracle, SQLite, etc.
Enhancements
- PostgreSQL databases are supported. DB structure visualization was added.
GenoViz 5.14 RC
Provides software applications and re-usable components for genomics data visualization One of the projects included in the GenoViz software pack is IGB: the Integrated Genome Browser more>> Provides software applications and re-usable components for genomics data visualization
One of the projects included in the GenoViz software pack is IGB: the Integrated Genome Browser.
The GenoViz project includes three components:
- GenoViz SDK (software development kit) is a library of re-usable components for genomics data visualization.
- Genometry is a unified data model to represent relationships between biological sequences. It is mainly used in the Integrated Genome Browser
- Integrated Genome Browser (IGB, pronounced "ig-bee") is a desktop application that uses both the GenoViz SDK and Genometry. It supports visualization and exploration of genes, genomes, and genome-scale data sets, especially data from genome tiling arrays.
IGB can display data from DAS (Distributed Annotation System) servers and local files on your file system.
Enhancements
- Updated xerces jar files to version 2.9.1.
- Removed jetty.jar file. It is no longer needed.
ProteinShader 0.9.4 Beta
A molecular visualization tool that can produce illustrative renderings of proteins ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that more>> A molecular visualization tool that can produce illustrative renderings of proteins
ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that approximate what an artist might create using pen and ink.
ProteinShader is written in Java and OpenGL Shading Language.
System requirements:
-
- Video card that supports Open GL 2.0
Enhancements
- Added a splash screen, support for GIF images, a few changes to mouse motion control, and a few changes to the names used in the menu system.
Gecko 1.2.1
Gene cluster detection in prokaryotic genomes Gecko is an Java based tool for an efficient and systematic detection of gene clusters in multiple prokaryotic genomes more>> Gene cluster detection in prokaryotic genomes
Gecko is an Java based tool for an efficient and systematic detection of gene clusters in multiple prokaryotic genomes.
Gecko is based on a formal model for gene clusters and is accompanied by an efficient algorithms locating them.
Gecko also provides an interactive visualization of detected clusters and therefore supports the analysis of the functional role of genes located in such clusters.
System requirements:
- Java 1.4 or later

ParaView 3.4
ParaView offers users a versatile, professional data analysis and visualization application. more>> ParaView 3.4 offers users a versatile, professional data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques. The data exploration can be done interactively in 3D or programmatically using ParaViews batch processing capabilities.
ParaView was developed to analyze extremely large datasets using distributed memory computing resources. It can be run on supercomputers to analyze datasets of terascale as well as on laptops for smaller data.
peekabot 0.6.0 RC1 / 0.5.2
3D visualization tool aimed at aiding roboticists in their daily chores peekabot is a versatile 3D visualization tool targeted at robotics researchers and developers more>> 3D visualization tool aimed at aiding roboticists in their daily chores
peekabot is a versatile 3D visualization tool targeted at robotics researchers and developers.
Its multi-platform, easily extendable, general purpose, scalable, free as in free speech and does not depend on any other frameworks to function. peekabot also provides some functionality for interacting with your robots using the GUI.
Testing your algorithms in both simulated and real environments? No problem, with peekabot you get the same visualization at no extra charge. Our only requirement is that the device can talk TCP/IP.
Enhancements
- This is a bugfix-only release of peekabot that mainly fixes issues relating to building and running peekabot on Mac OS X.
weka 3.7.0
Machine learning algorithms for solving real-world data mining problems more>> Machine learning algorithms for solving real-world data mining problems
Weka is a collection of machine learning algorithms for data mining tasks. The algorithms can either be applied directly to a dataset or called from your own Java code.
Weka contains tools for data classification, regression, pre-processing, association rules, clustering, and visualization. It is also well-suited for developing new machine learning schemes.
System requirements:
- Java
Structure 2.1
A protein / macromolecule visualization tool that runs as a screensaver module more>> A protein / macromolecule visualization tool that runs as a screensaver module
Structure is a free and mesmerizing screensaver for Mac OS X that draws on the National Center for Biotechnology Informations protein databases to display beautiful 3D protein structures on your screen.
Structure colorfully renders PDB (Protein Data Bank) files using unique algorithms. The module automatically annotates, colors, and rotates structures for an educational and captivating display.
Show off your research or simply enjoy this entrancing introduction to structural biology!
Regardless of whether you know anything about biology or not, the structures on your screen create a mesmerizing and informative screensaver.
Main features:
- Never get bored - automatically downloads new structures from the Protein Data Bank archive.
- Have a favorite protein? Structure can load files from a folder of your choice.
- Clear and informative rendering - transparent wireframes effectively differentiate and highlight ligands and heterogens.
- Text overlay provides additional details about each structure.
- Fast OpenGL rendering means low processor usage.
System requirements:
- A screen resolution of at least 1024x768 is recommended.
Enhancements
- Improved user controls
- Two new rendering algorithms
- Better camera control
visualization tool that runs as a screensaver module. It colorfully renders PDB (Protein Data ... algorithms. The module automatically annotates, colors, and rotates structures for an