muscle enhancers
Shared Menus Enhancer 1.7
Shared Menus Enhancer is a browser adding Shared Menus to applications that do not have Shared Menus capability. more>>
Shared Menus Enhancer 1.7 is a browser adding Shared Menus to applications that do not have Shared Menus capability. Currently, this module adds Shared Menus compatibility to Safari, Apple Mail, Firefox, Camino, Shiira, Mozilla and Netscape for use with URL Manager Pro (the bookmark manager) and Web Confidential (the password manager). Optionally, you can add more applications. The module is based on Application Enhancers (APE) and as such is a 'haxie'.
MUSCLE 4.61
Client-server messaging system for dynamic distributed applications more>> Client-server messaging system for dynamic distributed applications
MUSCLE is a cross-platform, robust, somewhat scalable client-server messaging system for dynamic distributed applications that runs under any POSIX-compliant operating system.
MUSCLE has been developed, used, and refined as the networking component of BeShare, CueConsole, CueStation, and various other audio control applications at Level Control Systems (now Meyer Sound Laboratories) for over six years.
Main features:
- Use BMessage-like muscle:Messages under any operating system.
- Send flattened muscle:Messages from one computer to another over TCP streams, eliminating unnecessary compatibility and protocol-versioning hassles.
- Run a muscled server on a central machine, and write (or download) client programs to log in to the server and communicate through it. Once logged in, client programs can discover who else is logged in, send muscle:Messages to other clients, and store muscle:Messages in the servers RAM for other clients to download later. Clients can also subscribe to selected data on the server, and be automatically notified whenever it changes. Unicast-style, multicast-style, and broadcast-style Message routing are all supported via an intelligent hierarchical pattern-matching routing mechanism. Writing multiplayer games, IRC style chat applications, SETI style distributed calculation apps, or any other type of distributed software is made easy because MUSCLE handles all the dirty work for you!
- Customize the included muscled server by defining your own session logic or message-streaming protocol. (Note that this is only necessary for certain specialized applications--the standard server provides sufficient functionality for most things)
- Write your client code in C , C, Java, Delphi, or Python. Single-threaded and multi-threaded messaging APIs are provided for all of the aforementioned languages.
- Or just use the included message, string, dataIO, hashtable, dequeue, string-tokenizer, reference-count, regular expression and pattern matching parser, and object-pool code by themselves, as handy cross-platform utility classes. All source code is included, and you are free to use and abuse it any way you wish.
Enhancements
- Added GetTotalNumSignalsReceived() and
- GetNumSignalsReceivedOfType() methods to the
- SignalMultiplexer class.
- Added an IsCurrentThreadMainThread() function to
- SetupSystem.{cpp,h}.
- Added support for a "catchsignals" keyword to
- HandleStandardDaemonArgs(). This keyword, if
- specified, will cause the main threads
- ReflectSession() (if any) to add a signal handler
- session to itself.
- Added support for a MUSCLE_AVOID_SIGNAL_HANDLING compiler
- flag that can be defined by applications that dont
- want to compile in signal handling support.
- Added a SignalChildProcess() method to the
- ChildProcessDataIO class.
- ChildProcessDataIO:WaitForChildProcessToExit()
- now takes an optional timeout value, and returns
- true if the child exited or false if it timed out.
- In the ChildProcessDataIO class, I replaced
- SetKillChildOnClose() and SetWaitForChildOnClose() with
- a single SetChildProcessShutdownBehavior() method which
- provides for more flexibility, making it possible to
- do a "soft shutdown with a hard kill after a timeout".
- Removed the "catchsignals" support from muscledMain()s
- setup code, since that support is now part of
- HandleStandardDaemonArgs() instead.
Application Enhancer 2.5.2
Application Enhancer is a program for 3rd party modules to improve and strengthen the way applications behave and work. more>>
Application Enhancer 2.5.2 is a program for 3rd party modules to improve and strengthen the way applications behave and work. Application Enhancers work on an application level, therefore they do not affect the stability of the underlying system. The technology behind Application Enhancer system has been in research and development for more than 4 years now, and many Unsanity haxies (including WindowShade X, FruitMenu, Silk and others) are now using it. The software development kit for developing modules is also available on the Application Enhancer home page.
BBEdit-PHP-Enhancer 1.0.1
BBEdit-PHP-Enhancer is a BBEdit plug-in that gives you many more PHP color highlights more>>
Since version 6 BBEdit has been able to colorize PHP keywords. While BBEdits list of keywords was very limited in the beginning, a lot of entries have been added with each new BBEdit version, but up to this very day, the list remains incomplete.
BBEdit-PHP-Enhancer is a patch that removes BBEdits built-in keyword list and replaces it with another one.
Compared to BBEdit version 6.0.x / 6.1.x you will get more than 2,000 (!) additional keywords and even the current version 6.5.3 (as of 10/30/2002) lacks more than 200 keywords found in BBEdit-PHP-Enhancers list.
Please note that the patch does not work with BBEdit Lite, but only with the commercial version.
Enhancements:
- Added alert: User is explicitly asked to quit BBEdit if it is running
- Added alert: User is explicitly asked to backup BBEdit
- Creator and type of patched file are checked before patch is applied
- Some error messages are a little more detailed
- Added Readme files
- Dramatically reduced the applications size by 90%
- Added a bundle identifier
- Changed online help.
MuscleDataBase 1.2b27
MuscleDataBase - Log and analyze muscle growth more>>
Enhancements:
- Bug fixes and improvements.
CLC Sequence Viewer 6.2
CLC Sequence Viewer is a freeware that creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options. more>>
CLC Sequence Viewer 6.2 is a freeware that creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.
Major Benefits:
- You will have easy access to a large number of integrated research tools:
-
- Creating and editing alignments
- Interactive restriction site analysis
- Phylogenetics
- Integrated GenBank searches
- Advanced DNA to Protein translation
- You can get easy access to hardware accelerated database searches
-
- Plug in the Bioinformatics Cube and increase your search speed up to 200 times
- Your research work will be easy to carry out
-
- The program is graphically based, intuitive, and user-friendly
- You will have a bioinformatics solution that continuously evolves
-
- The frequent program updates keep you up to date with the latest scientific developments. Your ideas for future improvements will have top priority.
- You will get superior customer service
-
- Free support to all users.
- Free support to all users.
Major Features:
- Bioinformatics features in CLC Sequence Viewer
- Multiple alignment of DNA, RNA, and proteins
-
- Two proprietary algorithms
- ClustalW
- Muscle
- T-Coffee
- MAFFT
- Kalign
- Consensus sequence determination and management
- Conservation score along alignments
- Open reading frame determination
- Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice
- Translation from DNA to proteins (all genetic translation tables)
- Reports with residue composition, molecular weight and iso electric point (for proteins)
- Neighbor-joining and UPGMA phylogenies
- Restriction site analysis and viewing
- Create reverse complement
- Shuffle sequence
- Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio
- Other features in CLC Sequence Viewer
- Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases
- All types of files can be saved in local projects and launched from the program
- Detailed history log
- User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences
- Text-based sequence view
- Easy printing of reports and graphics
- Export of user-defined figures to various graphics file formats
- Import and export of data in a large number of file formats
- Option of working with different files and in different file projects at the same time
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
Enhancemnets:
- New features:
-
- Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
- Advanced view of elements in a folder including batch editing.
- Extract sequences improvements
- You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
- "Find" in text view now accepts Enter as command to find the next hit
- Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
- Export of annotations in GFF format (note that annotations with joined regions are not supported)
- Bug fixes:
-
- Problem rendering scatter plots without lines
- DNA strider files could loose name upon import
- Rare misplacement of annotations when editing very large sequences
- Various bug-fixes
License:Freeware
License:Freeware
CLC RNA Workbench 4.2
CLC RNA Workbench brings you an easy way to a range of complex algorithms and options. RNA secondary structures can be predicted using state-of-the-art free energy minimization algorithms. more>>
CLC RNA Workbench 4.2 brings you an easy way to a range of complex algorithms and options. RNA secondary structures can be predicted using state-of-the-art free energy minimization algorithms.
Major Benefits:
- You will have easy access to a large number of integrated research tools:
-
- Secondary structure prediction
- Graphical view and editing of secondary structure
- Tabular view of structures and energy contributions
- Symbolic representation in sequence view
- You can make your computer a High Performance Computing center
-
- Unleash the hidden powers in your CPU with the Bioinformatics Cell
- Plug in the Bioinformatics Cube and increase your search speed up to 200 times
- Your research work will be easy to carry out
- The program is graphically based, intuitive, and user-friendly
- Share data with your colleagues using CLC Database Solution
- You will have a bioinformatics solution that continuously evolves
-
- The frequent program updates keep you up to date with the latest scientific developments. Your ideas for future improvements will have top priority.
- You can customize your workbench
- You have the possibility to customize your workbench through our Software Developer Kit.
Major Features:
- Bioinformatics features in CLC RNA Workbench
- Secondary structure prediction
- Graphical view and editing of secondary structure
- Tabular view of structures and energy contributions
- Symbolic representation in sequence view
- Pattern search
- Search for sequence matches
- Motif search for basic patterns
- Motif search using regular expressions
- Motif search with ProSite patterns
- Pattern discovery (unknown patterns)
- Project and data management
- Full integration of data input, data management, calculation results, and data export
- Detailed history log
- All types of files can be saved in local projects, and launched from the program
- Import and export of data in a large number of file formats
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
- Other bioinformatics features
- DNA, RNA and protein sequence editor displaying both linear and circular molecules
- Multiple alignment of DNA, RNA, and proteins
-
- Two proprietary algorithms
- ClustalW
- Muscle
- T-Coffee
- MAFFT
- Kalign
- Joining multiple alignments into one
- DNA, RNA, and protein alignment editor
- Interactive logo graphs along both DNA, RNA and Protein alignments
- Batch processing of analyses on multiple sequences in one work-step
- Advanced re-alignment and fix-point alignment option
- Manual annotation of sequences
- Dot plot based analyses
- Local complexity region analyses and complexity plots
- Gap fraction graphs
- G/C content analysis and graphs
- Advanced pairwise comparison
- Extract annotations
- Database searches
- Web based sequence search using BLAST
- BLAST on local databases
- Build local BLAST databases
- GenBank Entrez searches
- PubMed lookup
- Web based lookup in UniProt, NCBI, and Google
Enhancements:
- New features:
-
- Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
- Advanced view of elements in a folder including batch editing.
- Extract sequences improvements
- You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
- "Find" in text view now accepts Enter as command to find the next hit
- Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
- Export of annotations in GFF format (note that annotations with joined regions are not supported)
- Bug fixes:
-
- Fixed tblastn numbering issue
- Problem rendering scatter plots without lines
- DNA strider files could loose name upon import
- Rare misplacement of annotations when editing very large sequences
- Various bug-fixes

CLC DNA Workbench 5.5
CLC DNA Workbench 5.5 is a helpful program that creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options. more>>
CLC DNA Workbench 5.5 is helpful program that creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options. This 4-week fully functional demo of CLC Gene Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
Major Features:
- DNA sequence analysis
- Editor for graphically and algorithmically advanced primer design
- Assembly of DNA sequence data
- Multiplexing - Process Tagged Sequences has an option to filter away groups with few sequences.
- Molecular cloning
- Automatic SNP annotation of sequences
- Local complexity region analyses
- Reverse translation from protein to gene, based on translation tables from a number of species
- Advanced restriction enzyme analysis and management
- Dot plot based analyses
- DNA statistics report including a number of characteristics of a given molecule
- NCBI sequence data search
- Access to web info from PubMed
- Pattern search
- Search for sequence matches
- Motif search for basic patterns
- Motif search using regular expressions
- Motif search with ProSite patterns
- Pattern discovery (unknown patterns)
- Database searches
- Web-based sequence search using BLAST
- BLAST on local databases
- Build local BLAST databases
- GenBank Entrez searches
- UniProt searches (SwissProt/TrEMBL)
- PubMed lookup
- Web-based lookup in UniProt, NCBI, and Google
- SNP annotation using BLAST
- Project and data management
- Full integration of data input, data management, calculation results, and data export
- Detailed history log
- All types of files can be saved in local projects, and launched from the program
- Import and export of data in a large number of file formats
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
- Other bioinformatics features
- DNA, RNA and protein sequence editor displaying both linear and circular molecules
- Multiple alignment of DNA, RNA, and proteins
-
- Two proprietary algorithms
- ClustalW
- Muscle
- T-Coffee
- MAFFT
- Kalign
- Joining multiple alignments into one
- DNA, RNA, and protein alignment editor
- Interactive logo graphs along both DNA, RNA and Protein alignments
- Batch processing of analyses on multiple sequences in one work-step
- Advanced re-alignment and fix-point alignment option
- Manual annotation of sequences
- Dot plot based analyses
- Local complexity region analyses and complexity plots
- Gap fraction graphs
- G/C content analysis and graphs
- Advanced pairwise comparison
- Extract annotations
Enhancements:
- Gateway cloning. Simple and easy-to-use support for creating Gateway entry and expression clones.
- Search for matches among all your saved primers. The Find Binding Sites tool has been greatly improved to now allow you to search among all your primers. In addition, you also get a tabular output of the binding sites and possible fragments.
- In silico PCR: create PCR product based on primer pair and template sequence (including primer extensions). As part of the improve...
Requirements:
- Mac OS X 10.4 or later (including Intel-based Macs)
- Windows 2000, XP, Vista, or Windows 7
- Linux: Redhat or SuSE
- 256 MB RAM required
- 2 GB RAM recommended
- 1024 x 768 display recommended
License:update/patch
CLC Protein Workbench 5.1
Advanced protein sequence anayses. more>>
CLC Protein Workbench 5.1 is a useful tool which provides a wide range of advanced protein analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
This 2 x 2 weeks of fully functional demo includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application.
Major Features:
- Protein sequence analysis
- Integrated 3D molecule view
- Transmembrane helix prediction
- Antigenicity
- Secondary protein structure prediction
- PFAM domain search
- Web-based prediction of signal peptides and their cleavage sites
- Hydrophobicity analyses and graphs
- Protein charge analysis and graphs
- Reverse translation from protein to gene (a number of translation tables)
- Interactive translations of DNA and RNA to protein (both single sequences and alignments)
- Proteolytic cleavage detection
- Report of protein statistics (one or more proteins in each report)
- Comprehensive report including a range of protein analyses in one document
- Database searches
- Web based sequence search using BLAST
- BLAST on local databases
- Build local BLAST databases
- GenBank Entrez searches
- UniProt searches (SwissProt/TrEMBL)
- PubMed lookup
- Web based lookup in UniProt, NCBI, and Google
- Pattern search
- Search for sequence matches
- Motif search for basic patterns
- Motif search using regular expressions
- Motif search with ProSite patterns
- Pattern discovery (unknown patterns)
- Project and data management
- Full integration of data input, data management, calculation results, and data export
- Detailed history log
- All types of files can be saved in local projects, and launched from the program
- Import and export of data in a large number of file formats
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
- Other bioinformatics features
- DNA, RNA and protein sequence editor displaying both linear and circular molecules
- Multiple alignment of DNA, RNA, and proteins
-
- Two proprietary algorithms
- ClustalW
- Muscle
- T-Coffee
- MAFFT
- Kalign
- Joining multiple alignments into one
- DNA, RNA, and protein alignment editor
- Interactive logo graphs along both DNA, RNA and Protein alignments
- Batch processing of analyses on multiple sequences in one work-step
- Advanced re-alignment and fix-point alignment option
- Manual annotation of sequences
- Dot plot based analyses
- Local complexity region analyses and complexity plots
- Gap fraction graphs
- G/C content analysis and graphs
- Advanced pairwise comparison
- Extract annotations
Enhancements:
- Better feedback on processes: there is a tool tip showing details and start time.
- Translation of DNA to protein in sequence views can now be set to follow existing CDS/ORF annotations.
- Much improved memory performance and processing time of large data sets
- Output and error log files are now placed in the application data directory in the user home
- Fixed error when parsing files from Clone Manager (cm5-files)
- UniProt search works again
Requirements:
- 3D viewing requires an OpenGL 3D graphics driver (included with almost all graphics cards)
- Mac OS X 10.4 or later (including Intel-based Macs)
- Windows 2000, Windows XP, or Windows Vista
- Linux: Redhat or SuSE
- 256 MB RAM required
- 2 GB RAM recommended
- 1024 x 768 display recommended
BMI Calculator 1.0
BMI Calculator is created as an easily calculated index of body fat for adults that uses only height and weight. more>>
BMI Calculator 1.0 is created as an easily calculated index of body fat for adults that uses only height and weight. The formula used in this Calculator is (Weight in Pounds / Height in Inches squared) x 703.
The definitional formula is Weight in Kilograms / Height in Meters squared. Because the BMI uses only height and weight, it does not take into account the distribution of muscle and bone mass. Thus, it may be incorrect for athletes or the elderly who generally exhibit unusual distributions of muscle and bone mass.
The BMI should be considered in the context of other variables and used with caution, following consultation with a physician.
Virtue 3.2.1
Virtue is a shareware authors improvement on Apples Charcoal font; the font that replaces Chicago as the default font under Mac OS 8 more>> Virtue is a shareware authors improvement on Apples Charcoal font; the font that replaces Chicago as the default font under Mac OS 8. Virtue is similar to Epsi Sans, the font that ships with the popular GUI enhancers Aaron and Kaleidoscope. To start using Virtue, simply place the accompanying TrueType font suitcase into your fonts folder.
None
XFNews 1.0
XFNews - Counts down until the X-Files movie release and displays news from xfilesnews.com more>> Little Soldiers is a mind bending, strategic-puzzle game that places you and your compatriots on a range of challenging, classified military missions. Armed with rocket missiles, bullets, building materials, pick axes, and your own mind muscle strength, you must build carefully placed fortification, explode bombs, plan cautiously thought out routes in order to proceed safely to your desired escape areas. Youll have to perfect your teamwork skills and decision making because it is a matter of life or death for you and your fellow soldiers. Some very tricky situations will force you to be on your toes and to think strategically. Stay completely focused on your goal. You will be briefed at the beginning of each mission and will then follow your orders to complete your given task.
Features
- 8 FREE levels
- 36 levels in the full version
- In-game Tutorial
- Excellent graphics (OpenGL)
- 4 original soundtracks
- challenging, fun puzzles that will give your mind a workout<<less
Primate 1.5.2
Primate is a tool to help you manage your Unsanity Application Enhancers (.ape). Requirements: Mac OS X 10.1.5 or later more>> Primate is a tool to help you manage your Unsanity Application Enhancers (.ape).
Mac OS X 10.1.5 or later.
Version 1.5.2 fixed unexpected quits on close.

Body Mass Index - Slim Liner 1.0
Body Mass Index - Slim Liner offers you an ability to links your weight to your height. more>> Body Mass Index - Slim Liner 1.0 offers you an ability to links your weight to your height. It gives you more information about your body-constitution than does your weight alone. The BMI shouldn't be used for babies, little children and athletes with a big amount of muscles, because in these cases it can give you wrong information!
Requirements: Mac OS X 10.3 or later.
Body Mass Index -- Slim Liner 1.0
Body Mass Index -- Slim Liner is a BMI calculator more>>
It gives you more information about your body-constitution than does your weight alone.
The BMI shouldnt be used for babies, little children and athletes with a big amount of muscles, because in these cases it can give you wrong information!
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