multiplex
Surround Multiplex 1.0
Surround Multiplex will combine 6 audio mono Wave channels (48 kHz / 16 bits) into one multichannel AC52 file more>>
mplexer 1.0.1
mplexer is a graphical user interface for mplex more>>
mplexer features drag-and-drop support, fast access to the most common multiplex settings and easy-to-use A/V sync adjustment.
AlleleID 7.01
AlleleID works great and has a friendly interface. more>>
AlleleID 7.01 works great and has a friendly interface.
Major Features:
- Designs real time PCR assays and microarrays for single templates, multiplex reactions and aligned sequences.
- In-built ClustalW multiple sequence alignment capability.
- Design support for TaqMan probes, TaqMan MGB probes, molecular beacons, FRET, SYBR Green and microarrays.
- Ability to design minimal sets of oligos to differentiate strains from a mix.
- Designs oligos that amplify and detect various species at one time by identifying the conserved regions.
MissingMpegTools 0.9.3
MPEG, VCD, SVCD video tools. more>>
Minx Transcoder 1.1b3
Minx Transcoder helps you compress MPEG2 video files more>>
Main features:
- Batch encoder Automatic calculation of bitrate needed to encode video Only senses 29.97.
- 25 fps NTSC and PAL.
Enhancements:
- Added multiplex function
- Added VIDEO_TS folder creation
- Added disk image creation
- Added diskspace availability checking
- Plugins updated to latest available versions
- Interface Makeover
- Other Bugfixes
- (plus minor bugfixes to 1.1b1,1.1b2).
Oligo 7.24
Oligo is a useful multi-functional program that allows you to search for and select oligonucleotides from a sequence file for polymerase chain reaction (PCR), DNA sequencing, site-directed mutagenesis, and various hybridization applications. more>>
Oligo 7.24 is a useful multi-functional program that allows you to search for and select oligonucleotides from a sequence file for polymerase chain reaction (PCR), DNA sequencing, site-directed mutagenesis, and various hybridization applications.
The OLIGO software has been broadly accepted as the industry software standard for selecting and analyzing oligonucleotides for various molecular biology applications. The first commercial version of the software has been introduced in 1989.
Major Features:
- Calculate hybridization temperature and secondary structure of oligonucleotides based on the nearest neighbor thermodynamic values.
- Is a good tool for construction of synthetic genes, finding an appropriate sequencing primer among those already synthesized, finding and multiplexing consensus prmers and probes, and even finding potential restriction sites in a protein.
- With Oligo you can analyze open reading frames down to predicted molecular weight and pKa of proteins, and search for restriction enzyme sites, not only in DNA but also in reverse-translated proteins.
- For each primer or primer pair, Oligo's various analysis windows show a multitude of useful data, such as DNA and RNA secondary structure, dimer formation, false priming and homology, internal stability, composition and physical properties.
sequencing primer among those already synthesized, finding and multiplexing consensus prmers and probes, and even finding potential restriction sites in a protein. The OLIGO software hasLicense:update/patch
primer among those already synthesized, finding and multiplexing consensus prmers and probes, and even finding potential restriction sites in a protein. The OLIGO software has been broadlyQTCoffee 1.2.4
QTCoffee - Manipulate QuickTime media via command line more>>
The QTCoffee tools allow you to modify movies by extracting tracks and chapters, scaling & rotating tracks (or the entire movie). You can also multiplex movies together (e.g. take a video track from one movie and a sound track from another), join movies together, and split a movie into equal duration parts, at specified times, or by chapters. Files with only MPEG-4 video and/or AAC audio can also be saved as MP4 movies without reconversion.
Why would you want such a thing? Well, if you only happen to need these particular features, and dont want to pay $30 for Quicktime Pro, then this is for you! More importantly, these utilities can be used inside shell scripts and are therefore very useful for batch processing. We think of them more as complements to Quicktime Pro rather than replacements for it.
QTCoffee is donation-ware for personal and academic use. If the tools are useful to you you are encouraged to purchase a license or pay whatever amount of money you feel is appropriate. If you use it for commercial purposes (even if you dont make any money specifically off the project) you will need to purchase a license at $10 per seat.
Main features:
- Joining (concatenating) movies or audio files, so they play one after the other, with special support for pass-through joining of MPEG-4 video and AAC audio to MPEG-4 files. (See also our shareware iTunesJoin scripts.)
- Multiplexing of movies so they play at the same time. Useful for:
- Putting together audio and video tracks from other utilities
- Masking unwanted (noisy) parts of a video
- Letterboxing content
- Picture-in-picture effect
- Scaling movie tracks (for resizing video content)
- Changing the playback rate of movies or audio
- Extracting or removing tracks
- Extracting or removing chapters
- Splitting a movie into equal duration pieces or at specified times
- Splitting a movie into individual chapters.
Enhancements:
- Corrected a bug in the -timescale -sameAsTrack option that was introduced in 1.2.3.
Kismet 200905 RC1
Kismet is an 802.11 layer2 wireless network detector, sniffer, and intrusion detection system more>> Kismet is an 802.11 layer2 wireless network detector, sniffer, and intrusion detection system
Kismet is an 802.11 layer2 wireless network detector, sniffer, and intrusion detection system.
Kismet will work with any wireless card which comes with support for the raw monitoring (rfmon) mode, and can sniff 802.11a, 802.11b, and 802.11g traffic.
Kismet identifies networks by passively collecting packets and detecting standard named networks, detecting (and given time, decloaking) hidden networks, and infering the presence of nonbeaconing networks via data traffic.
Main features:
- Ethereal/Tcpdump compatible data logging
- Airsnort compatible weak-iv packet logging
- Network IP range detection
- Built-in channel hopping and multicard split channel hopping
- Hidden network SSID decloaking
- Graphical mapping of networks
- Client/Server architecture allows multiple clients to view a single
- Kismet server simultaneously
- Manufacturer and model identification of access points and clients
- Detection of known default access point configurations
- Runtime decoding of WEP packets for known networks
- Named pipe output for integration with other tools, such as a layer3 IDS like Snort
- Multiplexing of multiple simultaneous capture sources on a single Kismet instance
- Distributed remote drone sniffing
- XML output
- Over 20 supported card types
Enhancements
- This is a complete rewrite of Kismet (referred to as Kismet-Newcore while under development).
- It includes a new user interface, improved tracking, IDS functions, a plugin architecture... for both server and client, and auto-detection of drivers and supported channels on sniffing devices
CLC DNA Workbench 5.5
CLC DNA Workbench 5.5 is a helpful program that creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options. more>>
CLC DNA Workbench 5.5 is helpful program that creates a software environment enabling users to make a large number of advanced DNA sequence analyses, combined with smooth data management, and excellent graphical viewing and output options. This 4-week fully functional demo of CLC Gene Workbench provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
Major Features:
- DNA sequence analysis
- Editor for graphically and algorithmically advanced primer design
- Assembly of DNA sequence data
- Multiplexing - Process Tagged Sequences has an option to filter away groups with few sequences.
- Molecular cloning
- Automatic SNP annotation of sequences
- Local complexity region analyses
- Reverse translation from protein to gene, based on translation tables from a number of species
- Advanced restriction enzyme analysis and management
- Dot plot based analyses
- DNA statistics report including a number of characteristics of a given molecule
- NCBI sequence data search
- Access to web info from PubMed
- Pattern search
- Search for sequence matches
- Motif search for basic patterns
- Motif search using regular expressions
- Motif search with ProSite patterns
- Pattern discovery (unknown patterns)
- Database searches
- Web-based sequence search using BLAST
- BLAST on local databases
- Build local BLAST databases
- GenBank Entrez searches
- UniProt searches (SwissProt/TrEMBL)
- PubMed lookup
- Web-based lookup in UniProt, NCBI, and Google
- SNP annotation using BLAST
- Project and data management
- Full integration of data input, data management, calculation results, and data export
- Detailed history log
- All types of files can be saved in local projects, and launched from the program
- Import and export of data in a large number of file formats
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
- Other bioinformatics features
- DNA, RNA and protein sequence editor displaying both linear and circular molecules
- Multiple alignment of DNA, RNA, and proteins
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- Two proprietary algorithms
- ClustalW
- Muscle
- T-Coffee
- MAFFT
- Kalign
- Joining multiple alignments into one
- DNA, RNA, and protein alignment editor
- Interactive logo graphs along both DNA, RNA and Protein alignments
- Batch processing of analyses on multiple sequences in one work-step
- Advanced re-alignment and fix-point alignment option
- Manual annotation of sequences
- Dot plot based analyses
- Local complexity region analyses and complexity plots
- Gap fraction graphs
- G/C content analysis and graphs
- Advanced pairwise comparison
- Extract annotations
Enhancements:
- Gateway cloning. Simple and easy-to-use support for creating Gateway entry and expression clones.
- Search for matches among all your saved primers. The Find Binding Sites tool has been greatly improved to now allow you to search among all your primers. In addition, you also get a tabular output of the binding sites and possible fragments.
- In silico PCR: create PCR product based on primer pair and template sequence (including primer extensions). As part of the improve...
Requirements:
- Mac OS X 10.4 or later (including Intel-based Macs)
- Windows 2000, XP, Vista, or Windows 7
- Linux: Redhat or SuSE
- 256 MB RAM required
- 2 GB RAM recommended
- 1024 x 768 display recommended
Multiplexing - Process Tagged Sequences has an option to filter away groups with few sequences. Molecular cloning. Automatic SNP annotation of sequences. Local complexity region analyses. ReverseLicense:update/patch
BitVice MPEG2 Encoder 2.7.1
BitVice MPEG2 Encoder comes as a completely convenient utility which is dedicated to compress your movies into MPEG2 elementary video streams. more>>
BitVice MPEG2 Encoder 2.7.1 comes as a completely convenient utility which is dedicated to compress your movies into MPEG2 elementary video streams. BitVice is the Industy standard for encoding MPEG-2 files on mac computers. The video streams produced by BitVice are MPEG2 compliant, and as such, they can be mounted in any compliant DVD authoring or multiplexing tool.
The BitVice is a stand-alone software and makes use of QuickTime features when it comes to reading the movie you want to compress. Written by a few top of the world MPEG engineers, BitVice is the best real-world solution for you to produce high-end MPEG2 videos, suitable for DVD products, commercial spots or wherever you need an MPEG2 video encoding of the highest quality per bitrate available today.
BitVice MPEG2 Encoder SD 2.8.1
The BitVice MPEG2 Encoder is developed as a useful tool which uses the latest technology and science to compress your movies into MPEG2 elementary video streams. more>>
BitVice MPEG2 Encoder SD 2.8.1 is developed as a useful tool which uses the latest technology and science to compress your movies into MPEG2 elementary video streams.
BitVice is the Industy standard for encoding MPEG-2 files on mac computers. The video streams produced by BitVice are MPEG2 compliant, and as such, they can be mounted in any compliant DVD authoring or multiplexing tool.
The BitVice is a stand-alone software and makes use of QuickTime features when it comes to reading the movie you want to compress.
Written by a few top of the world MPEG engineers, BitVice is the best real-world solution for you to produce high-end MPEG2 videos, suitable for DVD products, commercial spots or wherever you need an MPEG2 video encoding of the highest quality per bitrate available today.
Major Features:
- Scene change detection
- True Variable Bit Rate
- Adaptive GOP structure
- IBP GOP sequences
- Special still picture encoding
- Adaptive Quantization and Bit Rate Control
- Interleaved rate control
- Extensive block matching
- DV input color and gamma correction
- Good control of the generated file size
Enhancements:
- Option to keep the multiplexed program stream after VOB creation
- Sometimes a VOB could not be created due to the target directory name
- Overall improvements
- Audio/Video now in excellent sync
Requirements:
- BitVice 2.8.1 runs on INTEL and PPC Mac's:
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- A Macintosh with Intel or PPC processor(s)
- Mac OS X Leopard - Mac
- Mac OS 10.6 Snow Leopard
- QuickTime 5.0 or later
Beacon Designer 7.6
Beacon Designer is a full featured and advanced Designer. Beacon Designer designs optimum qPCR oligo sets: more>>
Beacon Designer 7.6 is a full featured and advanced Designer. Beacon Designer designs optimum qPCR oligo sets:
- For molecular beacon, TaqMan, LNA, NASBA, FRET, Scorpions and SYBR Green
- Compatible sets for multiplex reactions
- Unique cross homology avoidance to ensure specificity
- Template secondary structure avoidance for assay success
- Probes for SNP allele discrimination
- MethyLight TaqMan assays for identifying DNA methylation patterns
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