Free modelers tools software for mac

MODELLER is used for homology or comparative modeling of protein three-dimensional structures. The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all non-hydrogen atoms.
MODELLER implements comparative protein structure modeling by satisfaction of spatial restraints, and can perform many additional tasks, including de novo modeling of loops in protein structures, optimization of various models of protein structure with respect to a flexibly defined objective function, multiple alignment of protein sequences and/or structures, clustering, searching of sequence databases, comparison of protein structures, etc.
Note: In order to use the program you need to register first.
Enhancements:
- Removal of limits on the number of pseudo atoms, segments, the length of file names and most other strings, and the number of parameters in parameter files.
- Removal of the read_restyp() command. To read a user-defined residue type file, set restyp_lib_file when creating an environ object.
- Bug fix: the correct VDW radii (as selected by topology.submodel) are now used for PSA calculations (previously the all-hydrogen radii were used in all cases).
- Improved error handling: almost all errors should be recoverable now (using the standard Python exception handling mechanism) and incorrect input should trigger an error rather than causing Modeller to crash (please report any crashes as bugs to the developers).
- SALIGN bug fixes, improved binning of access classes.
- Modeller scripts are now more like real Python scripts; the PYTHONPATH environment variable is honored, and additional command line arguments can be given to your scripts (accessible as sys.argv).
- Bug fix for alignment.segment_matching(): correct alignment scores are now written.
- Support for AMD64 and EM64T (Opteron/Xeon64) Linux machines.
- DOPE model assessment now returns only the DOPE energy itself by default, ignoring other energy terms.
- Bug fix for model.restraints.pick() when used with absolute position restraints; always allow 1-atom restraints to pass the residue_span_range check.

The Finder Tools package contains 7 scripts to help automate the following: Activate/Hide Apps, Close All Windows, Close Win/Hide Apps, Duplicate Files, Duplicate Folders, Open Folders and Unmount/Eject All disks. Descriptions of the scripts are included.

The package is completly freeware for personal use.

Modeler is a Sega Arcade Emulator for Mac OS X.
The current version supports the three Sega arcade boards based on the NEC V60 CPU - Sega System 32, Sega System 32 Multi, and Sega Model 1.
While the Model 1 games are currently not playable, due to the lack of 3D graphics emulation, the System 32 games work quite well.
Titles such as Golden Axe 2 and Spiderman are fully playable, provided you have a fast enough Mac.
Main features:
- PowerPC assembly Z80 core for sound playback.
Enhancements:
- Updated to shell version 1.6.

CPod Tools is a collection of python scripts for Chinesepod premium users: import CPods vocab XML or CSV file to IFlash, download audio, fetch dialogue transcripts (and more to come).
CPod Tools includes an easy to use interface to the scripts for OSX-users.

Main features:
- download the audio sentences of a dialog or the expansion section
- open the transcript html by the lessons level and id
- scrape the transcript html from the web or the html source file
- scrape the expansion sentences from the web or the html source file
- save scraped text to various formats
- avoid importing duplicates using an ignore list
- convert CPods Vocab Csv file to various formats, including IFlash.
- convert CPods Vocab Xml file to various formats, including IFlash.
- fetch only entries with a special tag from CPods Vocab Xml file
- download the vocab audio files
- store your recent setting for further use

Requirements:
Mac OS X 10.2 or later. For best performance, a Quartz Extreme compatible AGP video card is required.

Enhancements:
Version 0.9.5: Updated to shell version 1.6. See "About the Shell" for changes.

Unhide Tools 1.0 is known as a helpful tool which helps you unhide files. Did you notice that you can't see your Desktop Folder of your hard disk any more when you mount it via AppleShare? Do you want to get rid of all the OS X files and folders on your hard disk? These tools help you achieving this by making those hidden files and folders visible. Works on any other hidden files, too.

Cool Tools is a set of AppleScripts which provides a multitude of usefull tasks.

Liberate Desktops: Rebuilds desktop files automatically at next startup.

Quote UnQuote: Adds or deletes quote symbols and hard returns to text.

Selector: Selects files and folders by boolean combination of many filter criteria, and performs a number of actions, e.g. change file creator and type and set Finder attributes, on items found.

Show Document: Selects, in the Finder, the icon of the front document of the current application.

SuperAlias: Opens any number of files, folders and applications at once. Item list is easy to set and reconfigure.

UltraClip: Global glossary saves clipboard text to clipping files named and placed automatically, or optionally with a name you choose. Or loads a clipping back to the clipboard, optionally appending to existing text on the clipboard. Clips are editable and searchable.