microscope
The Virtual Microscope 6.2.2
The Virtual Microscope - supports interactive viewing of high-resolution, multi-dimensional datasets from various microscopes more>>
The Virtual Microscope is a tool that supports data from a Philips Environmental Scanning Electron Microscope (ESEM), and a Fluorescence Light Microscope.
Interface Controls
The interface provides a simulation of our actual microscope interface(s). Controls common to all datasets include brightness, magnification (usually up to 1800x), navigation, measurement, and annotation. SEM samples include a contrast control, and some also include a focus control.
The navigation and magnification controls allow the user to explore any point of interest on the sample. This differs from other virtual microscopes that have been produced which provide only a few hot spots that can be magnified and explored.
Focus
The focus control is a real focal plane adjustment instead of a blurring of the image. Our automated data capture software (see below) allows us to capture an arbitrary number of focal planes. Thus, the focus control on the Virtual Microscope allows the user to glide through those planes interactively, bringing items closer and farther into focus. This is particularly useful with thick specimens viewed in the SEM.
Annotations
We have included a full set of specimen annotation tools so that experts and laypeople alike can mark up the datasets for future reference. These annotations are useful for teaching details about the data, as well as for allowing teachers to ask students to identify data features as homework. The annotations can be saved and reloaded as XML files.
Automated Data Collection
It can take thousands of images to fully describe a single specimen so that the user can explore any point at varying magnifications with multiple focal planes. As a result, some our datasets are many gigabytes (GB) in size. In order to accurately and sanely collect this data, we have written various software programs that automatically control the instruments.
The Bugscope Connection
The software for our SEM is based off of a work on a previous project called Bugscope. Bugscope is an online educational outreach project that provides real-time access to our SEM over the web so that school children can look at bugs from their own backyards.
We have leveraged the remote-control software we wrote for Bugscope into an automated data-collection package for the SEM. On the Light Microscope, we are using Openlab, and will be distributing our tiling scripts in case you have a similar system.
Specimen IDs
Each Virtual Microscope specimen gets its own unique specimen identification number. For those building new samples, click the button below to generate a new specimen ID. Generated IDs expire after two months, so dont grab one until you need it. When specimens are submitted, we will verify they have a valid ID automatically.
Volocity LE 4.1.1
Volocity LE - Volume interactivity is the key to providing the user with an enhanced perception of depth and realism more>>
Volume interactivity is the key to providing the user with an enhanced perception of depth and realism. Interactivity also allows the scientist to rapidly explore and understand large volumes of data.
The powerful and advanced technology developed exclusively by Improvision for rapid, interactive volume visualization of 3D and 4D volumes has received several awards for innovation and is the subject of worldwide patent applications.
Volocity is the first true color 4D rendering system designed for biomedical imaging. It uses new highly advanced algorithims to provide high-speed, easy to use, interactive rendering of time resolved color 3D volumes.
Volocity allows the user to visualize a 3D object and then observe and interact with it over time, for the first time providing scientists with a system to dynamically visualize both the structure and the purpose of biological structures.
Main features:
- New - high speed image aquisition of 3D sequences
- Fast and highly interactive volume exploration in 3D and 4D.
- Intuitively easy to use for increased productivity.
- Export and publication of 3D images and data in standard file formats.
- Object classification, measurement and tracking in all dimensions.
- High quality restoration of confocal and wide field microscope images.
- Modular software for ease of use and future upgrades.
CoLocalizer Pro 2.5.1
Make colocalization analysis of confocal fluorescence microscopy images. more>>
CoLocalizer Pro 2.5.1 is developed to be smart software to make colocalization analysis which works professionally. It is used to obtain new and objective information about proteins and nucleic acids visualized using fluorescence techniques.
CoLocalizer Pro combines the power of it's unique background correction tools with implementation of already established algorithms to estimate colocalization quantitatively. CoLocalizer Pro software is used by leading scientific laboratories worldwide and has become a standard in this field of research.
Major Features :
- Works with images obtained by all major brands of confocal microscopes.
- Uses it's unique background correction tools to ensure reliability of quantification.
- Employs published algorithms for instant calculation of all known colocalization coefficients on the selected region of interest (ROI).
- Performs all calculations without the need for a confocal microscope.
- Analyzes image ROI, scatter gram ROI, reveals colocalized and selected pixels, traces pixels of a particular color.
- Exports data in various formats, such as Microsoft Excel, PDF, and HTML.
- Includes a comprehensive knowledge base for correct interpretation of the obtained coefficients calculations results.
- A native Mac OS X application, compatible with Apple iLife software suite.

Volocity 5.1
Volocity is a beneficial and easy-to-use application which provides the scientist with an interactive volume visualization system that will run on a standard desktop computer. more>>
Volocity 5.1 is a beneficial and easy-to-use application which provides the scientist with an interactive volume visualization system that will run on a standard desktop computer.
Volume interactivity is the key to providing the user with an enhanced perception of depth and realism. Interactivity also allows the scientist to rapidly explore and understand large volumes of data. The highly advanced technology developed exclusively by Improvision for rapid, interactive volume visualization of 3D and 4D volumes has received several awards for innovation and is the subject of worldwide patent applications.
Volocity is the first true color 4D rendering system designed for biomedical imaging. It uses new highly advanced algorithims to provide high-speed, easy to use, interactive rendering of time resolved color 3D volumes. Volocity allows the user to visualize a 3D object and then observe and interact with it over time, for the first time providing scientists with a system to dynamically visualize both the structure and the purpose of biological structures.
Major Features:
- New - high speed image aquisition of 3D sequences
- Fast and highly interactive volume exploration in 3D and 4D.
- Intuitively easy to use for increased productivity.
- Export and publication of 3D images and data in standard file formats.
- Object classification, measurement and tracking in all dimensions.
- High quality restoration of confocal and wide field microscope images.
- Modular software for ease of use and future upgrades.
Image SXM 189
Image SXM 189 is known as an extension version of the public domain image analysis software NIH Image that has been extended to handle the loading, display and analysis of scanning microscope images. more>> <<less
License:Freeware

ScummVM 1.0.0rc1
ScummVM 1.0.0rc1 offers you a program which is created to run certain classic graphical point-and-click adventure games as long as you already have their data files. more>>
ScummVM 1.0.0rc1 offers you a program which is created to run certain classic graphical point-and-click adventure games as long as you already have their data files. The clever part about this: ScummVM just replaces the executables shipped with the games, allowing you to play them on systems for which they were never designed!
Some of the adventures ScummVM supports include Adventure Soft's Simon the Sorcerer 1 and 2; Revolution's Beneath A Steel Sky, Broken Sword 1 and Broken Sword 2; Flight of the Amazon Queen; Wyrmkeep's Inherit the Earth; Coktel Vision's Gobliiins; Westwood Studios' The Legend of Kyrandia and games based on LucasArts' SCUMM (Script Creation Utility for Maniac Mansion) system such as Monkey Island, Day of the Tentacle, Sam and Max and more. You can find a thorough list with details on which games are supported and how well on the compatibility page. ScummVM is continually improving, so check back often.
Enhancements:
- Added support for Discworld
- Added support for Discworld 2 - Missing Presumed ...!?
- Added support for Return to Zork
- Added support for Leather Goddesses of Phobos 2
- Added support for The Manhole
- Added support for Rodney's Funscreen
- Added support for Cruise for a Corpse
- Improved GUI vastly: added quick search, introduced per-game options, improved mass-add dialog
- Broken Sword 1 & 2 now run with original cutscenes
- Increased The 7th Guest microscope puzzle difficulty to match original
- Major improvements to PSP, PS2 and WinCE ports
- New port for GP2X Wiz handheld game console.
Germs 1.0
Germs - Germs icon set more>>
What I saw there is only fantasy, he insists, but I have the uneasy feeling that the same distinct images will be appearing elsewhere...
The Germs icon set will take you to an imaginary journey to the microscopic world of germs.
VIDIX 1.0.0
VIDIX - Portable interface designed and introduced as an interface to userspace drivers to provide DGA everywhere where possible more>> Helicon Focus Mac is a program that creates one perfectly focused image from several partially focused images. The program is designed for optic microscope image processing to cope with the shallow depth-of-field problem.
Helicon Focus can also be used in macrophotography. The program can automatically adjust and resize images to combine the perfectly focused image<<less
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