magnification
MagnifiedView 1.0
MagnifiedView is described as a convenient as well as powerful tool that lets you display the cursors surrounding pixels. more>>
MagnifiedView 1.0 is described as a convenient as well as powerful tool that lets you display the cursor's surrounding pixels. It allows tweaking of the magnification, crosshair size/visibility, and update interval. Be sure to read the documentation!
Requirements: Mac OS X 10.2 or higher
Magnifing Glass 2.0
Magnifing Glass is an beneficial and easy to use application which is much like Apples old controlpanel, Close View. more>>
Magnifing Glass 2.0 is an beneficial and easy to use application which is much like Apple's old controlpanel, "Close View". It will magnify a section of the screen from normal up to, and beyond, 10x magnification. In addition, this program can take screen shots of whatever it is you are looking at.

Magnanimous 1.0
Magnanimous brings you a perfect and free software which is very useful. more>>
Magnanimous 1.0 brings you a perfect and free software which is very useful. Ever need a magnifing glass for your computer? Here's one that's available to you from the menubar 365 - 24/7. It has three different sizes and three different magnification levels. Hides away when you don't need it but easily there when you do.
Requirements: OSX 10.3.9+

ImageJ 1.43j
ImageJ can be considered to be a high-quality and handy public domain Java image processing program which is inspired by NIH Image for the Macintosh. more>>
ImageJ 1.43j can be considered to be a high-quality and handy public domain Java image processing program which is inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine. It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats including TIFF, GIF, JPEG, BMP, DICOM, FITS and "raw". It supports "stacks", a series of images that share a single window. It is multithreaded, so time-consuming operations such as image file reading can be performed in parallel with other operations. It can calculate area and pixel value statistics of user-defined selections. It can measure distances and angles.
It can create density histograms and line profile plots. It supports standard image processing functions such as contrast manipulation, sharpening, smoothing, edge detection and median filtering. It does geometric transformations such as scaling, rotation and flips. Image can be zoomed up to 32:1 and down to 1:32. All analysis and processing functions are available at any magnification factor. The program supports any number of windows (images) simultaneously, limited only by available memory. Spatial calibration is available to provide real world dimensional measurements in units such as millimeters. Density or gray scale calibration is also available.
Major Features:
- Runs Everywhere: ImageJ is written in Java, which allows it to run on Linux, Mac OS X and Windows, in both 32-bit and 64-bit modes.
- Open Source: ImageJ and its Java source code are freely available and in the public domain. No license is required.
- User Community: ImageJ has a large and knowledgeable worldwide user community. More than 1700 users and developers subscribe to the ImageJ mailing list.
- Macros: Automate tasks and create custom tools using macros. Generate macro code using the command recorder and debug it using the macro debugger. More than 300 macros are available on the ImageJ Web site.
- Plugins: Extend ImageJ by developing plugins using ImageJ's built in text editor and Java compiler. More than 500 plugins are available.
- Toolkit: Use ImageJ as a image processing toolkit (class library) to develop applets, servlets or applications.
- Speed: ImageJ is the world's fastest pure Java image processing program. It can filter a 2048x2048 image in 0.1 seconds (*). That's 40 million pixels per second!
- Data Types: 8-bit grayscale or indexed color, 16-bit unsigned integer, 32-bit floating-point and RGB color.
- File Formats: Open and save all supported data types as TIFF (uncompressed) or as raw data. Open and save GIF, JPEG, BMP, PNG, PGM, FITS and ASCII. Open DICOM. Open TIFFs, GIFs, JPEGs, DICOMs and raw data using a URL. Open and save many other formats using plugins.
- Image display: Tools are provided for zooming (1:32 to 32:1) and scrolling images. All analysis and processing functions work at any magnification factor.
- Selections: Create rectangular, elliptical or irregular area selections. Create line and point selections. Edit selectoins and automatically create them using the wand tool. Draw, fill, clear, filter or measure selections. Save selections and transer them to other images.
- Image Enhancement: Supports smoothing, sharpening, edge detection, median filtering and thresholding on both 8-bit grayscale and RGB color images. Interactively adjust brightness and contrast of 8, 16 and 32-bit images.
- Geometric Operations: Crop, scale, resize and rotate. Flip vertically or horizontally.
- Analysis: Measure area, mean, standard deviation, min and max of selection or entire image. Measure lengths and angles. Use real world measurement units such as millimeters. Calibrate using density standards. Generate histograms and profile plots.
- Editing: Cut, copy or paste images or selections. Paste using AND, OR, XOR or "Blend" modes. Add text, arrows, rectangles, ellipses or polygons to images.
- Color Processing: Split a 32-bit color image into RGB or HSV components. Merge 8-bit components into a color image. Convert an RGB image to 8-bit indexed color. Apply pseudo-color palettes to grayscale images.
- Stacks: Display a "stack" of related images in a single window. Process an entire stack using a single command. Open a folder of images as a stack. Save stacks as multi-image TIFF files.
Enhancements:
- Added the Image>Overlay submenu with Add Selection, Add Image, Hide Overlay, Show Overlay, From ROI Manager, To ROI Manager and Flatten commands (example1, example2).
- Added the ImageRoi class (JavaScript example).
- Bruno Vieira contributed Colony Counter, a plugin for counting bacteria colonies in agar plates.
- Marcel Austenfeld contributed Twain Scan, a plugin that uses the open source library from www.mms-computing.co.uk to capture images from Twain campatible scanners and cameras.
Requirements:
- Mac OS X 10.5 or later
All analysis and processing functions are available at any magnification factor. The program supports any number of windows (images) simultaneously, limited only by available memory. SpatialLicense:Freeware
License:Freeware
License:Freeware
Photomatix Pro 3.2.6
Photomatix Pro is described as an unique and handy tool that can enable you to recover highlights and shadows details of a high-contrast scene. more>>
Photomatix Pro 3.2.6 is described as an unique and handy tool that can enable you to recover highlights and shadows details of a high-contrast scene.
Using advanced algorithms, Photomatix Pro combines differently exposed shots into one image with increased dynamic range.
- Blend exposures hassle-free
- Generate an HDR image from multiple exposures
- Reveal details in highlights and shadows in HDR image
Designed for professional photographers and advanced amateurs, Photomatix Pro is a standalone application offering two methods of tone mapping, six methods of exposure blending, an alignment tool for out-of-register images, 16-bit support, and batch processing.
Enhancements:
- Made the ratio and preview magnification settings remembered separately depending on whether the image is in landscape or portrait mode.
- Made the text boxes of the Tone Mapping and Exposure Fusion settings in batch mode editable.
- Bug fixed: Position of the Tone Mapping Preview dialog was not correctly remembered.
Castle Defense 1.0
A fun dashboard widget where you must protect your castle. more>> ImageJ is a freeware image processing tool inspired by NIH Image.
ImageJ Features
Open Source:
ImageJ and its Java source code are freely available and in the public domain. No license is required.
User Community:
ImageJ has a large and knowledgeable worldwide user community. More than 1700 users and developers subscribe to the ImageJ mailing list.
Macros:
Automate tasks and create custom tools using macros. Automatically generate macro code using the command recorder. More than 300 macros are available on the ImageJ Web site.
Plugins:
Extend ImageJ by developing plugins using ImageJs built in text editor and Java compiler. More than 500 plugins are available.
Toolkit:
Use ImageJ as a image processing toolkit (class library) to develop applets, servlets or applications.
Speed:
ImageJ is the worlds fastest pure Java image processing program. It can filter a 2048x2048 image in 0.1 seconds (*). Thats 40 million pixels per second!
Data Types:
8-bit grayscale or indexed color, 16-bit unsigned integer, 32-bit floating-point and RGB color.
File Formats:
Open and save all supported data types as TIFF (uncompressed) or as raw data. Open and save GIF, JPEG, BMP, PNG, PGM, FITS and ASCII. Open DICOM. Open TIFFs, GIFs, JPEGs, DICOMs and raw data using a URL. Open and save many other formats using plugins.
Image display:
Tools are provided for zooming (1:32 to 32:1) and scrolling images. All analysis and processing functions work at any magnification factor.
Selections:
Create rectangular, elliptical or irregular area selections. Create line and point selections. Edit selectoins and automatically create them using the wand tool. Draw, fill, clear, filter or measure selections. Save selections and transer them to other images.
Image Enhancement:<<less
Internet Time Dockling 1.1
Internet Time Dockling - Internet time clock for the dock more>>
The Internet Time algorithm was changed from an arithmetic calculation to using a Cocoa NSTimeZone object.
The Beat value is easier to read at most dock magnifications, the dockling background color rotates through the color hue spectrum during a beat. The docking menu shows the users current date/time, the UTC date/time , and an Internet date/Time stamp. All of these menu items are copied to OS X clipboard when selected.
Scope Calculator 2.1
Scope Calculator calculates and compares the magnification, field of view, and exit pupil of up to 7 eyepieces more>>
Also allows easy toggling between the results when used normally, with a Barlow lens, and with a SCT reducer-corrector.
Enhancements:
- Version 2.1: Simplified interface and improved Read Me file.
- Improved handling of improper data entries.
- First Mac Classic version.
Asteroids 1.0
A fun shooter game for your dashboard. more>> ImageJ is a freeware image processing tool inspired by NIH Image.
ImageJ Features
Open Source:
ImageJ and its Java source code are freely available and in the public domain. No license is required.
User Community:
ImageJ has a large and knowledgeable worldwide user community. More than 1700 users and developers subscribe to the ImageJ mailing list.
Macros:
Automate tasks and create custom tools using macros. Automatically generate macro code using the command recorder. More than 300 macros are available on the ImageJ Web site.
Plugins:
Extend ImageJ by developing plugins using ImageJs built in text editor and Java compiler. More than 500 plugins are available.
Toolkit:
Use ImageJ as a image processing toolkit (class library) to develop applets, servlets or applications.
Speed:
ImageJ is the worlds fastest pure Java image processing program. It can filter a 2048x2048 image in 0.1 seconds (*). Thats 40 million pixels per second!
Data Types:
8-bit grayscale or indexed color, 16-bit unsigned integer, 32-bit floating-point and RGB color.
File Formats:
Open and save all supported data types as TIFF (uncompressed) or as raw data. Open and save GIF, JPEG, BMP, PNG, PGM, FITS and ASCII. Open DICOM. Open TIFFs, GIFs, JPEGs, DICOMs and raw data using a URL. Open and save many other formats using plugins.
Image display:
Tools are provided for zooming (1:32 to 32:1) and scrolling images. All analysis and processing functions work at any magnification factor.
Selections:
Create rectangular, elliptical or irregular area selections. Create line and point selections. Edit selectoins and automatically create them using the wand tool. Draw, fill, clear, filter or measure selections. Save selections and transer them to other images.<<less
iLifeDock 1.2b
iLifeDock offers a solution for your dock which is so long that even a 30 inch cinema display wouldnt fit. more>>
Enhancements:
- Magnification effect improved.
Requirements:
- Mac OS X 10.4 or later, iLife 06 (partially works with previous iLife versions)
NIH Image 1.63
NIH Image is a public domain image processing and analysis program for the Macintosh more>>
Image can acquire, display, edit, enhance, analyze and animate images. It reads and writes TIFF, PICT, PICS and MacPaint files, providing compatibility with many other applications, including programs for scanning, processing, editing, publishing and analyzing images. It supports many standard image processing functions, including contrast enhancement, density profiling, smoothing, sharpening, edge detection, median filtering, and spatial convolution with user defined kernels.
Image can be used to measure area, mean, centroid, perimeter, etc. of user defined regions of interest. It also performs automated particle analysis and provides tools for measuring path lengths and angles. Spatial calibration is supported to provide real world area and length measurements. Density calibration can be done against radiation or optical density standards using user specified units. Results can be printed, exported to text files, or copied to the Clipboard.
A tool palette supports editing of color and gray scale images, including the ability to draw lines, rectangles and text. It can flip, rotate, invert and scale selections. It supports multiple windows and 8 levels of magnification. All editing, filtering, and measurement functions operate at any level of magnification and are undoable.
Image directly supports Data Translation and Scion frame grabber cards for capturing images or movie sequences using a TV camera. Acquired images can be shading corrected and frame averaged. Other frame grabbers are supported via plug-in modules.
Image can be customized in three ways: via a built-in Pascal-like macro language, via externally compiled plug-in modules and on the Pascal source code level.
Glass II 3.2.1
Glass II is a creative and simple-to-use utility which creates a small window which displays a magnified view of whatever is under the cursor. more>>
Glass II 3.2.1 is a creative and simple-to-use utility which creates a small window which displays a magnified view of whatever is under the cursor.
Major Features:
- The view magnification can be from 1x to 16x actual size.
- The view can be shown with or without an overlaid grid.
- The view window can be resized as required.
- The magnified view can be copied to the clipboard.
- Glass II can optionally show the cursor position (in screen coordinates) and the colour of the pixel under the cursor.
Requirements:
- Mac OS X 10.4 PPC
- Mac OS X 10.3.9
- Mac OS X 10.4 Intel
- Mac OS X 10.0
- Mac OS X 10.1
- Mac OS X 10.5 PPC
- Mac OS X 10.2
- Mac OS X 10.5 Intel
- Mac OS X 10.3
- Mac OS Classic
Rays Bar Codes 2.0
Rays Bar Codes - Create, save, view bar codes more>>
Now, you may Save the barcode as a .brcdfl file for future use, or View the bar code in Illustrator CS.
The Virtual Microscope 6.2.2
The Virtual Microscope - supports interactive viewing of high-resolution, multi-dimensional datasets from various microscopes more>>
The Virtual Microscope is a tool that supports data from a Philips Environmental Scanning Electron Microscope (ESEM), and a Fluorescence Light Microscope.
Interface Controls
The interface provides a simulation of our actual microscope interface(s). Controls common to all datasets include brightness, magnification (usually up to 1800x), navigation, measurement, and annotation. SEM samples include a contrast control, and some also include a focus control.
The navigation and magnification controls allow the user to explore any point of interest on the sample. This differs from other virtual microscopes that have been produced which provide only a few hot spots that can be magnified and explored.
Focus
The focus control is a real focal plane adjustment instead of a blurring of the image. Our automated data capture software (see below) allows us to capture an arbitrary number of focal planes. Thus, the focus control on the Virtual Microscope allows the user to glide through those planes interactively, bringing items closer and farther into focus. This is particularly useful with thick specimens viewed in the SEM.
Annotations
We have included a full set of specimen annotation tools so that experts and laypeople alike can mark up the datasets for future reference. These annotations are useful for teaching details about the data, as well as for allowing teachers to ask students to identify data features as homework. The annotations can be saved and reloaded as XML files.
Automated Data Collection
It can take thousands of images to fully describe a single specimen so that the user can explore any point at varying magnifications with multiple focal planes. As a result, some our datasets are many gigabytes (GB) in size. In order to accurately and sanely collect this data, we have written various software programs that automatically control the instruments.
The Bugscope Connection
The software for our SEM is based off of a work on a previous project called Bugscope. Bugscope is an online educational outreach project that provides real-time access to our SEM over the web so that school children can look at bugs from their own backyards.
We have leveraged the remote-control software we wrote for Bugscope into an automated data-collection package for the SEM. On the Light Microscope, we are using Openlab, and will be distributing our tiling scripts in case you have a similar system.
Specimen IDs
Each Virtual Microscope specimen gets its own unique specimen identification number. For those building new samples, click the button below to generate a new specimen ID. Generated IDs expire after two months, so dont grab one until you need it. When specimens are submitted, we will verify they have a valid ID automatically.
Apple Displays Software 1.7.1
Previously known as AppleVision software. This version includes the folowing changes from AppleVision 1.5.3: AppleVision 750 and AppleVision 850 displays were renamed the Apple ColorSync Displays more>> Previously known as AppleVision software. This version includes the folowing changes from AppleVision 1.5.3: AppleVision 750 and AppleVision 850 displays were renamed the Apple ColorSync Displays. Mac OS compatibility is 7.5 and later. Name of the disk set and installation changed to Apple Displays Software. DigitalColor Meter changed so magnification and RGB values work on a non-AppleVision monitor. The Sound Volume control strip module was added to the disk set.
Syste 7.5 or later, Apple brand monitor, 68040 processor or better,
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