Free in a sequence software for mac

Sequence 2.1.1 offers you a very useful tool which is able to capture and save an image or a movie of your screen to your computer's clipboard, or a file (in an image format of your choice). A video or screenshot can be emailed, uploaded on the web, or passed around however you want. Using a multithreaded code and a 64-bit enabled compression system, Sequence can handle capturing DVD, audio, or any other multimedia application. Sequence is powerful enough to simultaneously record from your webcam and your screen.

With the voice recording function, you can easily describe what you are doing on your screen. Simply use your Mac's built-in microphone. With Sequence, its easy to make training videos, product demos, create tutorials, archive streaming video, the possibilities are endless! For instance, you could easily help your friends and family learn more about their computers. No need for boring and complicated documentation!

With Sequence you can give clear and precise explainations, including mouse movements and keyboard entries. Sequence supports saving screenshots as bmp, pict, gif, jpg, png, tiff, pdf. Sequence was built for Mac OS X Leopard, using the best of Mac OS X technologies: Core Animation, QuickLook, QTKit, Core Image, iChat Theater, etc.

Major Features:

1. Universal Binary
   • This product is compiled as a universal binary. Coinciding with apple's release of Intel-based computer systems, this will allow the product to run on any Macintosh, containing either a PowerPC chip or an Intel chip, without any speed slowdown, or program emulation.
2. Modern Code
   • Built from the ground up in Cocoa and Objective C, this product supports numerous Mac OS X technologies that include: animation, sheets and help tips.
3. The Right Price
   • All purchases of the applications include free updates / upgrades, forever!
   • Offer great volume discounts if you purchase multiple licenses.
   • Those purchasing the applications for the educational sector can receive a 20% discount coupon code and, since are a French company, all US and international purchases are automaticaly tax exempt.
4. Strong Customer Support
   • Are always here to help whenever you need. Send an email with any questions you may have or visit the support website to browse Frequently Asked Questions
5. Staying In Touch
   • Love hearing from all of the customers, new and old. Let know what you're up to and will do the same!
   • This product works because it's built by people like you for people like you. Need a feature? Request it.
     

Enhancements:

• Support of Mac OS X 10.6 Snow Leopard
• Bug fixed with user license and some proxy servers

CLC Sequence Viewer 6.2 is a freeware that creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.

Major Benefits:

• You will have easy access to a large number of integrated research tools:
• • Creating and editing alignments
  • Interactive restriction site analysis
  • Phylogenetics
  • Integrated GenBank searches
  • Advanced DNA to Protein translation
• You can get easy access to hardware accelerated database searches
• • Plug in the Bioinformatics Cube and increase your search speed up to 200 times
• Your research work will be easy to carry out
• • The program is graphically based, intuitive, and user-friendly
• You will have a bioinformatics solution that continuously evolves
• • The frequent program updates keep you up to date with the latest scientific developments. Your ideas for future improvements will have top priority.
• You will get superior customer service
• • Free support to all users.
    

Major Features:

1. Bioinformatics features in CLC Sequence Viewer
   • Multiple alignment of DNA, RNA, and proteins
   • • Two proprietary algorithms
     • ClustalW
     • Muscle
     • T-Coffee
     • MAFFT
     • Kalign
   • Consensus sequence determination and management
   • Conservation score along alignments
   • Open reading frame determination
   • Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice
   • Translation from DNA to proteins (all genetic translation tables)
   • Reports with residue composition, molecular weight and iso electric point (for proteins)
   • Neighbor-joining and UPGMA phylogenies
   • Restriction site analysis and viewing
   • Create reverse complement
   • Shuffle sequence
   • Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio
2. Other features in CLC Sequence Viewer
   • Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases
   • All types of files can be saved in local projects and launched from the program
   • Detailed history log
   • User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences
   • Text-based sequence view
   • Easy printing of reports and graphics
   • Export of user-defined figures to various graphics file formats
   • Import and export of data in a large number of file formats
   • Option of working with different files and in different file projects at the same time
   • Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects

Enhancemnets:

• New features:
• • Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
  • Advanced view of elements in a folder including batch editing.
  • Extract sequences improvements
  • You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
  • "Find" in text view now accepts Enter as command to find the next hit
  • Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
  • Export of annotations in GFF format (note that annotations with joined regions are not supported)
• Bug fixes:
• • Problem rendering scatter plots without lines
  • DNA strider files could loose name upon import
  • Rare misplacement of annotations when editing very large sequences
  • Various bug-fixes

Sequence editing, reverse complement, protein translation, ORF finding, secondary structure, composition, isoelectric point, primer design, pairwise comparison, publish layout, sequence reformatting. Fetches sequence entries directly from the NCBI via Accession number or GID. Reads most sequence formats.
This (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.
Enhancements:
- Fixed launching conflict introduced with QuickTime 7.0.4
- Digest: Using "REBase 601" enzyme list
- Allow launching with Java 5 (JDK 1.5).

Quick Sequence Diagram Editor 3.0.5 is a versatile and easy-to-use tool which offers you an effective way for generating professional UML sequences. Quick Sequence Diagram Editor is a fast and reliable tool, written in Java 5, for generating professional UML sequence diagrams from text. Supports actors, con-/destructors, threads, broadcasts, notes, and fragments. It can serve as a Javadoc taglet. Exports PDF, SVG, (E)PS, PNG.

CLC DNA Workbench 5.2 is considered as a flexible program that provides a wide range of advanced DNA sequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.

Major Benefits:

• You will have easy access to a large number of integrated research tools:
• • Assembly of DNA sequence data
  • Editor for graphically and algorithmically advanced primer design
  • Molecular cloning
  • Automatic SNP annotation of sequences
  • Sharing of data among researchers
  • All actions performed are logged automatically for later review or printing
• You can make your computer a High-Performance Computing center
• • Unleash the hidden powers in your CPU with the Bioinformatics Cell
  • Plug in the Bioinformatics Cube and increase your search speed up to 200 times
  • Your research work will be easy to carry out
  • The program is graphically based, intuitive, and user-friendly
  • Share data with your colleagues using CLC Database Solution
• You will have a bioinformatics solution that continuously evolves
• • The frequent program updates keep you up to date with the latest scientific developments. Your ideas for future improvements will have top priority.
• You can customize your workbench
• • You have the possibility to customize your workbench through our Software Developer Kit.

Major Features:

1. DNA sequence analysis
   • Editor for graphically and algorithmically advanced primer design
   • Assembly of DNA sequence data
   • Multiplexing - Process Tagged Sequences has an option to filter away groups with few sequences.
   • Molecular cloning
   • Automatic SNP annotation of sequences
   • Local complexity region analyses
   • Reverse translation from protein to gene, based on translation tables from a number of species
   • Advanced restriction enzyme analysis and management
   • Dot plot based analyses
   • DNA statistics report including a number of characteristics of a given molecule
   • NCBI sequence data search
   • Access to web info from PubMed
2. Pattern search
   • Search for sequence matches
   • Motif search for basic patterns
   • Motif search using regular expressions
   • Motif search with ProSite patterns
   • Pattern discovery (unknown patterns)
3. Database searches
   • Web-based sequence search using BLAST
   • BLAST on local databases
   • Build local BLAST databases
   • GenBank Entrez searches
   • UniProt searches (SwissProt/TrEMBL)
   • PubMed lookup
   • Web-based lookup in UniProt, NCBI, and Google
   • SNP annotation using BLAST
4. Project and data management
   • Full integration of data input, data management, calculation results, and data export
   • Detailed history log
   • All types of files can be saved in local projects, and launched from the program
   • Import and export of data in a large number of file formats
   • Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
5. Other bioinformatics features
   • DNA, RNA and protein sequence editor displaying both linear and circular molecules
   • Multiple alignment of DNA, RNA, and proteins
   • • Two proprietary algorithms
     • ClustalW
     • Muscle
     • T-Coffee
     • MAFFT
     • Kalign
   • Joining multiple alignments into one
   • DNA, RNA, and protein alignment editor
   • Interactive logo graphs along both DNA, RNA and Protein alignments
   • Batch processing of analyses on multiple sequences in one work-step
   • Advanced re-alignment and fix-point alignment option
   • Manual annotation of sequences
   • Dot plot based analyses
   • Local complexity region analyses and complexity plots
   • Gap fraction graphs
   • G/C content analysis and graphs
   • Advanced pairwise comparison
   • Extract annotations

Enhancements:

• New features:
• • Create new contig from selection
  • Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
  • Advanced view of elements in a folder including batch editing.
  • Extract sequences improvements
  • You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
  • "Find" in text view now accepts Enter as command to find the next hit
  • Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
  • Export of annotations in GFF format (note that annotations with joined regions are not supported)
• Bug fixes:
• • Fixed tblastn numbering issue
  • Fixed problem with graphics export of contigs
  • Problem rendering scatter plots without lines
  • DNA strider files could loose name upon import
  • Rare misplacement of annotations when editing very large sequences
  • Various bug-fixes

EditSeq 6.0 allows you to work on nucleic acid and protein sequences of all sizes from various popular formats. You can also utilize the integrated internet interface to search NCBI's databases to locate sequences by accession number, sequence similarity via BLAST, or keyword searches via the Entrez text query.

For your convenience, EditSeq separates the sequence, comments and annotations into three editable panes. Dynamic links between the sequence and its annotations automatically update feature coordinates when you edit a sequence and provide feature inclusion when copying/pasting sequences. Available functionality also includes the ability to reverse complement, translate, back-translate sequences and identify ORFs. As with other Lasergene applications, EditSeq will handle sequences ranging in size from a couple of nucleotides to a whole bacterial genome.

WebSucker is a powerful web-content retrieving tool.

It can automatically download whole webpages, with a scan depth down to 6, search the web for email addresses and download hundreds of URLs that follow a specific pattern, that is, make up an easily defined sequence.

Loaded with options and tweaks, WebSucker is the perfect buddy for every web-surfer.