gene
Gene Ontology 1.5.2.3
Eztoo DVD To iPod Converter for MAC 1.10.04 is designed as a professional program that can allow you to convert DVD to iPod video MP4 and audio M4A to play on your iPod, iPod touch, Apple TV, PSP, more>> <<less
HaploGeneMapper 1.0
HaploGeneMapper brings users a brilliant tool which can visualise the genomic proximity of haploinsufficient genes to segmental duplications on a chromosome-by-chromosome basis more>>
HaploGeneMapper 1.0 brings users a brilliant tool which can visualise the genomic proximity of haploinsufficient genes to segmental duplications on a chromosome-by-chromosome basis. Corresponding pairs of segmental duplications, which may be subject to non-allelic homologous recombination, can be highlighted using the cursor. Similarly, the names of haploinsufficient genes and segmental duplications can be displayed by hovering the cursor over them. If required, the user can zoom into a section of the selected chromosome by providing the start and end coordinates of the desired region.
Major Features:
- Colorful, clear and customizable visualization of features on one or more chromosomes simultaneously.
- Zoom in on any part of the chromosome.
- Very simple input format. Scripts are provided for the generation of input files from regular lists of genes or segmental duplications in text files.
- High flexibility: although it was originally developed to display haploinsufficient genes and segmental duplications, it can be used to represent any features with interesting spatial relationships within a genome.
Gene Construction Kit 3.0.3
Gene Construction Kit is a high-speed and powerful program which allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. more>>
Gene Construction Kit 3.0.3 is a high-speed and powerful program which allows graphic manipulation of DNA sequences and sophisticated plasmid drawing options. It has an award winning interface design that allows graphic manipulation of DNA sequences in addition to providing sophisticated drawing capabilities for Mac and Windows users.
Enhacements:
- (W) Some functions send active window to the background
- (M/W) page setup parameters are not being saved
- (W) drag file to open doesn't work
- (W) crash during export
- (W) Windows Double-click to open files will not work if application already open
- (M/W) Mark Sites doesn't remember previous settings
- (M) Illustration - problems with enzyme cut site information display
- (M/W) Three letter file extension displayed in construct title<<less
TargetScanner 1.0
TargetScanner is a GUI that predicts mammalian MicroRNA Targets more>>
These microRNAs are very similar to the short interference RNAs that are used in iRNAi, but instead of inducing the degradation of a proteins messenger RNA, microRNA work by suppressing its translation.
It is thought that these microRNAs play an important role in the control of transcription factors.
TargetScanner is a tool that helps you find potential microRNA target sites in the UTRs of gene transcripts.
GenomeView 1.9999
GenomeView is a versatile and simple to use genome browser and annotation editor. more>>
GenomeView 1.9999 is a versatile and simple to use genome browser and annotation editor. Annotation, multiple alignments, syntenic mappings and more can be displayed. Many file formats are supported for input and output. New functionality can be added using a plugin architecture.
Enhancements:
- Fixed issue with undo-redo queue
- Hover window for short-read coverage
- Display pairing of paired reads
- Bug fixes all around
- Improvements to the display of the short-read alignments
- BAM/BAI support over http
- Extended configuration options
- Improved gene editing
- Navigator improvements
- Mark reference area when selecting a CDS
Exponents 1.0
Exponents - A simple program for learning and improving your skill with exponents more>>
Exponents is a drill designed to help you practice and learn the rules for handling, of all things, ... exponents.
There are two distributions. One is a OS X specific version and the other is a version that will run on any operating System that has the appropriate version of Java installed.
GenoViz 5.14 RC
Provides software applications and re-usable components for genomics data visualization One of the projects included in the GenoViz software pack is IGB: the Integrated Genome Browser more>> Provides software applications and re-usable components for genomics data visualization
One of the projects included in the GenoViz software pack is IGB: the Integrated Genome Browser.
The GenoViz project includes three components:
- GenoViz SDK (software development kit) is a library of re-usable components for genomics data visualization.
- Genometry is a unified data model to represent relationships between biological sequences. It is mainly used in the Integrated Genome Browser
- Integrated Genome Browser (IGB, pronounced "ig-bee") is a desktop application that uses both the GenoViz SDK and Genometry. It supports visualization and exploration of genes, genomes, and genome-scale data sets, especially data from genome tiling arrays.
IGB can display data from DAS (Distributed Annotation System) servers and local files on your file system.
Enhancements
- Updated xerces jar files to version 2.9.1.
- Removed jetty.jar file. It is no longer needed.
Gecko 1.2.1
Gene cluster detection in prokaryotic genomes Gecko is an Java based tool for an efficient and systematic detection of gene clusters in multiple prokaryotic genomes more>> Gene cluster detection in prokaryotic genomes
Gecko is an Java based tool for an efficient and systematic detection of gene clusters in multiple prokaryotic genomes.
Gecko is based on a formal model for gene clusters and is accompanied by an efficient algorithms locating them.
Gecko also provides an interactive visualization of detected clusters and therefore supports the analysis of the functional role of genes located in such clusters.
System requirements:
- Java 1.4 or later
OligoChecker X 2.40
OligoChecker X is a flexible tool for you to use Excel to maintain a list of your oligos. more>>
OligoChecker X 2.40 is a flexible tool for you to use Excel to maintain a list of your oligos.
You have just moved from working on one gene to working on a similar one and wonder which primers you can still use for your PCR
You can subclone and rearrange sequences and somewhere along the line lost track on which primer to use where
You have started in a new lab, inherited a box of oligos and a folder full of printouts that came with them but no information on what they were ordered for
You have ordered and waited for primers because you don't know which of the ones available you can use with your sequence
If any of these sound familiar then OligoChecker might be for you.
Have you just moved from working on one gene to working on a similar one and wonder which primers you can still use for your PCR? Do you subclone and rearrange sequences and somewhere along the lineLicense:update/patch
MegAlign 7.0
MegAlign offers you a choice of four pairwise and four multiple sequence alignment methods for aligning nucleic acid or polypeptide sequences more>>
MegAlign 7.0 is actually beneficial to offer you a choice of four pairwise and four multiple sequence alignment methods for aligning nucleic acid or polypeptide sequences. Enter your own sequences or load public data directly from NCBI*. If you want to find more related sequences for alignment, simply run a BLAST query or utilize the Entrez text query interface*, then drop in the sequences you want from the list of matches.
Easily customize views of alignments to highlight the similarities or differences of the sequences. Differences in chemical, structural or functional characteristics between sequences can also be displayed as well as your own groupings or consensi. You may create a subalignment from the current alignment by simply selecting a sub-region.
MegAlign also enables you to construct phylogenetic trees, generate detailed numerical reports or export data of sequence comparisons. Whether you want to compare gene families or sequence pairs, MegAlign provides you with flexible tools for customizing output for presentation and publication.
Rat Genome Database Search 1.0
Rat Genome Database Search is a professional and easy-to-use widget that offers scientific researchers a quick way to run searches for genes, quantitative trait loci, ontologies, rat strains, literature references, and other information available at the Rat Genome Database. more>>
Rat Genome Database Search 1.0 is a professional and easy-to-use widget that offers scientific researchers a quick way to run searches for genes, quantitative trait loci, ontologies, rat strains, literature references, and other information available at the Rat Genome Database.
versusSNP 1.3
Free and flexible tool for mining SNPs versusSNP is a flexible tool for mining SNPs between two close related genomes more>> Free and flexible tool for mining SNPs
versusSNP is a flexible tool for mining SNPs between two close related genomes.
You align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types.
System requirements:
-
Enhancements
- Fix a bug when selecting all mutation sites in scatter plot window
- Add type select menu in scatter plot window
BioGoggles 1.0
BioGoggles is made for analysis of multivariate data sets such as gene or protein expression data sets more>> <<less
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