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BLAST 2.2.13

BLAST 2.2.13


BLAST - Basic Local Alignment Search Tool more>>
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
Main features:
Nucleotide
- Quickly search for highly similar sequences (megablast)
- Quickly search for divergent sequences (discontiguous megablast)
- Nucleotide-nucleotide BLAST (blastn)
- Search for short, nearly exact matches
- Search trace archives with megablast or discontiguous megablast
Protein
- Protein-protein BLAST (blastp)
- Position-specific iterated and pattern-hit initiated BLAST (PSI- and PHI-BLAST)
- Search for short, nearly exact matches
- Search the conserved domain database (rpsblast)
- Protein homology by domain architecture (cdart)
Translated
- Translated query vs. protein database (blastx)
- Protein query vs. translated database (tblastn)
- Translated query vs. translated database (tblastx)
Genomes
- Human, mouse, rat, chimp , cow, pig, dog, sheep, cat
- Chicken, puffer fish, zebrafish
- Environmental samples
- Protozoa
- Insects, nematodes, plants, fungi, microbial genomes, other eukaryotic genomes
Special
- Search for gene expression data (GEO BLAST)
- Align two sequences (bl2seq)
- Screen for vector contamination (VecScreen)
- Immunoglobin BLAST (IgBlast)
- SNP BLAST
Meta
- Retrieve results.
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Download (19.3MB)
Added: 2006-02-15 License: Freeware Price:
1348 downloads
BLAST Widget 1.2

BLAST Widget 1.2


BLAST Widget - Access to BLAST at NCBI more>>
The BLAST widget provides a quick access to the Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.
Enhancements:
- You now have the possibility to search conserved domains on a protein.
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Download (152KB)
Added: 2006-05-30 License: Freeware Price:
1250 downloads
blast command 1.0

blast command 1.0


blast command - Send a mass plain-text e-mail to all the addresses in standard input more>>
blast is a command to send a mass plain-text e-mail to all the addresses in standard input. It can also send attachments. Sendmail must already be configured on the computer for blast to work. A HTML version is being developed.

Completly freeware for non-commercial use.
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Download (5KB)
Added: 2006-07-04 License: Freeware Price:
1210 downloads
WU BLAST 2.0 2006-01-01

WU BLAST 2.0 2006-01-01


WU BLAST is an application including gapped alignments and Sum statistics in all search modes (BLASTP, BLASTN, BLASTX, TBLASTN, TBLASTX), segmented sequences, and more more>> <<less
Added: 2006-01-12 License: update/patch Price:
4 downloads
Bubble Blast! 1.1.0

Bubble Blast! 1.1.0


Bubble Blast! is a new and fascinating action game immersed in the atmosphere of a puzzle one. An arcade challenge where you have: two opponents, 120 bubbles, one winner. Bubble Blast! is for Mac OS X only more>>

Bubble Blast! 1.1.0 is a new and fascinating action game immersed in the atmosphere of a puzzle one. An arcade challenge where you have: two opponents, 120 bubbles, one winner. Bubble Blast! is for Mac OS X only. It is freeware and will be released as open source, under the uDevGame license.

Rules:

  • If a bubble hit another bubble of the same color, they explode.
  • If a bubble hit another bubble of another color, they bounce

Goal - You win by:

  • sending a bubble offscreen from your opponent's side.
  • if your opponent is hit by three bubbles.

Major Features:

  1. 1P and 2P mode.
  2. HID support for joysticks and other devices.
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Download (6.7MB)
Added: 2003-12-01 License: Freeware Price:
4 downloads
Nucleotide BLAST 1.0

Nucleotide BLAST 1.0


Nucleotide BLAST is released to be a functional widget which provides an easy and fast access to the Nucleotide Basic Local Alignment Search Tool at NCBI. more>>

Nucleotide BLAST 1.0 is released to be a functional widget which provides an easy and fast access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.

Requirements: Mac OS X 10.4

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Download (140.6KB)
Added: 2006-09-03 License: Freeware Price:
downloads
Antialiasing (BLAST) 0.3

Antialiasing (BLAST) 0.3


Antialiasing (BLAST) is considered as a professional and helpful tool that let you disabler font smooting under OS X in order to improve CPU performance. more>>

Antialiasing (BLAST) 0.3 is considered as a professional and helpful tool that lets you disable font smooting under OS X in order to improve CPU performance. Without font smooting your Mac speed increase, keep free power for other application. You can choose from different setting, in order to let you use smooting over 8,12,128 font size. Powered by MacOSXBlast team.

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Download (634.8KB)
Added: 2003-06-13 License: Freeware Price:
downloads
Protein BLAST Widget 1.0

Protein BLAST Widget 1.0


Protein BLAST Widget is designed to be a helpful tool which can provide a quick access to the Protein Basic Local Alignment Search Tool at NCBI. more>>

Protein BLAST Widget 1.0 is designed to be a helpful tool which can provide a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.

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Download (139.7KB)
Added: 2006-09-03 License: Freeware Price:
downloads
 
Other version of Protein BLAST Widget
Protein BLAST Widget 1.0Protein BLAST Widget provides a quick access to the Protein Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence
License:Free
Download (143K)
downloads
Added: 2006-09-04
Translated BLAST Widget 1.0

Translated BLAST Widget 1.0


Translated BLAST Widget is released to be a functional widget which provides an easy and fast access to the Translated Basic Local Alignment Search Tool at NCBI. more>>

Translated BLAST Widget 1.0 is released to be a functional widget which provides an easy and fast access to the Translated Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.

Requirements: Mac OS X 10.4

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Download (150.4KB)
Added: 2006-09-03 License: Freeware Price:
downloads
 
Other version of Translated BLAST Widget
Translated BLAST Widget 1.0Translated BLAST Widget provides a quick access to the Translated Basic Local Alignment Search Tool at NCBI. You just have to type or paste
License:Free
Download (154K)
downloads
Added: 2006-09-04
Nucleotide BLAST Widget 1.0

Nucleotide BLAST Widget 1.0


Nucleotide BLAST Widget provides a quick access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used more>>
Nucleotide BLAST Widget 1.0 brings you a fast access to the Nucleotide Basic Local Alignment Search Tool at NCBI. You just have to type or paste your sequence and to select the program to be used.

Requirements:

  • Mac OS X 10.4 or later.
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Download (144K)
Added: 2006-09-04 License: Free Price:
downloads
PSU Blast Image Config 2.7b1

PSU Blast Image Config 2.7b1


PSU Blast Image Config (aka BIC) is a complete software solution to quickly restore and configure a Macintosh back to a known state: Configure and set the Open Firmware security, preventing more>> PSU Blast Image Config (aka "BIC") is a complete software solution to quickly restore and configure a Macintosh back to a known state:
  • Configure and set the Open Firmware security, preventing unauthorized access via single (root) user mode or booting from external devices
  • Set the date and time
  • Restore a master disk image quickly to a Macs internal hard disk
  • Configure the network settings on the restored disk (via ncutil):
    • IP Address : DHCP or Manual (Static)
    • Subnet Mask & Router
    • DNS Servers
    • Network Names (Computer and Local)
  • Change the startup disk to the restored disk
  • Extensible through pre- and post-restore scripts
  • Specify default and autorun settings via a preference file

This tool is intended to automate the build process as much as possible. We use BIC here at PSU to do the initial install of the base OS and applications on all of our lab and kiosk Macs.

Requirements:
Mac OS X 10.3.9 or later, ncutil MUST be installed if you wish to be able to configure the network settings on the restored disk.
Enhancements:
Version 2.7b1 release notes
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Download (6MB)
Added: 2007-08-26 License: Free Price:
downloads
 
Other version of PSU Blast Image Config
PSU Blast Image Config 2.6.5Justin Elliott - PSU Blast Image Config - Clone/restore OS X disk images, and more. PSU Blast Image Config. PSU
License:Freeware
Download (4MB)
1115 downloads
Added: 2006-10-05
Apple/Genentech BLAST update

Apple/Genentech BLAST update


Apple/Genentech BLAST update is an update applied for the program Apple/Genentech BLAST. more>> <<less
Download (2.2MB)
Added: 2002-02-06 License: Freeware Price:
downloads
Icbiass

Icbiass


ICBIASS is I Cant Believe Its Another Space Shooter more>>
Icbiass is a 2D space shooter game. In fact, you might say "I Cant Believe Its Another Space Shooter", if you get my meaning. :-)
It is a two player only game, playable by any two machines with IP address, and features pixel level sprite collisions for more realistic battles, and is multi-threaded. Basically you fly your ship, one of ten you can choose from, and try to blast the other player. Each ship has a different weapon, and a special ability like cloaking or point defenses.
Enhancements:
- Added artwork from Carlos Camacho, an editor of idevgames.com. Thanks!
- Also added the ability for sprites to check, to the pixel level, if they collide with something.
- The old code only used the bounding rectangle, you see.
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Download (5.8MB)
Added: 2005-10-13 License: Freeware Price:
1473 downloads
easiEST 0.3

easiEST 0.3


A bioinformatics package to analyze ESTs easyEST is a bioinformatics package to analyze ESTs (Expressed Sequence Tags) easily more>> A bioinformatics package to analyze ESTs

easyEST is a bioinformatics package to analyze ESTs (Expressed Sequence Tags) easily.
easyEST contains functionalities of ESTs for EST submission, Batch BLAST and BLAST result parser, etc. easiEST contains JAVA GUI applications for analyzing ESTs or other sequences.

System requirements:
- Java

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Download (359KB)
Added: 2009-06-15 License: GPL Price: FREE
195 downloads
BZFlag 2.0.8

BZFlag 2.0.8


BZFlag - Multiplayer, networked tank-shooting game more>>
BZFlag is a fast-paced multiplayer network game in which you drive a tank around a 3D landscape, trying to blow up your opponents.
Meanwhile, you capture flags that give you special powers (including: invisibility, super-powerful lasers, and the ability to drive through walls).
Players drive around an arena and blast other enemy tanks. The 3D is much enhanced from BattleZone in terms of looks and gamplay (features a multi-tiered battle arena).
Here the tanks can jump. Tanks can enhance armaments or gain new fighting abilities by capturing power-up flags littered around the playing field. Simple premise that rapidly becomes addicitive. Good fun.
Enhancements:
- Add a plugin to record matches - Jeff Myers.
- Add an option to send out a UDP heartbeat message for observers behind flakey routers - Jeff Myers
- Replaced admin message sound - Sean Morrison
- Client and server now close http connections correctly - Daniel Remenak
- Fixed crash when rogue autopilot picks up a team flag - Daniel Remenak
- Fixed spawnpoint selection regression - Sean Morrison.
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Download (13.3MB)
Added: 2006-05-17 License: Freeware Price:
2813 downloads
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