atoms
atoms++ 0.1.0
atoms++ - C++ wrapper around much of the UNIX C API more>>
It uses modern C++ patterns, such as the ubiquitous boost::shared_ptr
COLUMBUS
COLUMBUS - Programs for high-level ab initio molecular electronic structure calculations more>>
An important feature of COLUMBUS is its flexibility. In addition to standard classes of reference wave functions, such as CAS or RAS, calculations can be performed with selected reference configurations. Though the multi-reference aspect of COLUMBUS is emphasized, single-reference calculations can also be carried out very efficiently.
Main features:
- SCF - closed-shell and restricted open-shell
- MCSCF - general MCSCF with quadratic convergence including state-averaging
- MR-CISD - direct CI for all single and double excitations from an arbitrary set of reference configurations
- MR-ACPF and MR-AQCC - modified MRCISD methods that include iterative size-extensivity corrections
- Analytic gradient for MCSCF, MR-CISD, MR-ACPF and MR-AQCC
- Analytic MR-CISD nonadiabatic coupling vector
- Automatic geometry optimization and saddle-point searches
- Automatic searches for minima on the crossing seam (conical intersections)
- Spin/orbit CI
- A massively-parallel version of the MR-CISD, MR-AQCC and respective two-electron density program sections.
Enhancements:
- Analytic MR-CISD/AQCC gradient for excited states based on state-averaged MCSCF calculations
- Analytic MR-CISD nonadiabatic coupling vector
- Automatic searches for minima and saddle points in excited states
- Automatic searches for minima on the crossing seam (conical intersections)
- Integration of the GUGA spin-orbit CI program (still in test phase)
- A massively parallel CI and two-electron density code
- Enhanced user interface including visualization features via MOLDEN.
Aquatomic 1.0.1
Arrange atoms into logical structures. more>>
The objective is to solve puzzles by moving molecules around. Solving the increasingly difficult levers in as few moves as possible is quite a challenge. Aquatomic is based on the KDE game KAtomic, but sports a nice Aqua UI.
Hydrogen Atom 1.5
Free Java based physics simulation that shows the orbitals (wave functions) of the hydrogen atom more>>
This applet displays real orbitals (as typically used in chemistry) by default; to display complex orbitals (as typically used in physics) select "Complex Orbitals" from the popup menu in the top upper right. You can also view combination of orbitals.
Requirements: Java
ParserTools 0.2.0
ParserTools - Parse RSS and Atom feeds more>>
- RSS and Atom feeds
- application and scripting component terminology resources.
Enhancements:
- added Terminology Suite;
- changed format of key-value list records in parse RSS
BottomFeeder 4.6
A news aggregator client (RSS and Atom) written in VisualWorks Smalltalk. more>> A news aggregator client (RSS and Atom) written in VisualWorks Smalltalk.
BottomFeeder is a news aggregator client (RSS and Atom) written in VisualWorks Smalltalk. It has full support for CSS, including user defined CSS.
Main features:>
- Full support for CSS, including user defined CSS.
- View news in 3 pane or 2 pane modes.
- Subscribe to any RSS or Atom format in use.
- View items in a summary Newspaper View.
- Synchronize 2 or more BottomFeeders via HTTP or file import.
- Subscribe to feeds or feedlists.
- Supports HTTPS, HTTP Authentication, and HTTP Digest Authentication.
- Plugins for blogging, IRC, and MSN Messenger contacts.
- Easy to update or upgrade from within BottomFeeder.
- Save as many or as few feed items for as long as you want.
- Import or Export in common OPML format.
- Binary compatible on every platform. No need to recompile.

BottomFeeder for Mac OS 4.4
BottomFeeder is a news aggregator client written in VisualWorks Smalltalk more>> BottomFeeder is a news aggregator client (RSS and Atom) written in VisualWorks Smalltalk. BottomFeeder runs on Linux x86, (also FreeBSD), PowerPC Linux, Sparc Linux, Windows (98/ME/NT/2000/XP/CE 4), Mac OS8/9, Mac OS X (PPC, intel), AIX, SGI Irix, HP-UX, and Solaris (SPARC and x86).
What sets BottomFeeder apart?
Full support for CSS, including user defined CSS
View news in 3 pane or 2 pane modes
Subscribe to any RSS or Atom format in use
View items in a summary Newspaper View
Synchronize 2 or more BottomFeeders via HTTP or file import
Subscribe to feeds or feedlists
Supports HTTPS, HTTP Authentication, and HTTP Digest Authentication
Plugins for blogging, IRC, and MSN Messenger contacts
Easy to update or upgrade from within BottomFeeder
Save as many or as few feed items for as long as you want
Import or Export in common OPML format
Binary compatible on every platform. No need to recompile<<less

BottomFeeder for Mac OS X 4.4
BottomFeeder is a news aggregator client written in VisualWorks Smalltalk more>> BottomFeeder is a news aggregator client (RSS and Atom) written in VisualWorks Smalltalk. BottomFeeder runs on Linux x86, (also FreeBSD), PowerPC Linux, Sparc Linux, Windows (98/ME/NT/2000/XP/CE 4), Mac OS8/9, Mac OS X (PPC, intel), AIX, SGI Irix, HP-UX, and Solaris (SPARC and x86).
What sets BottomFeeder apart?
Full support for CSS, including user defined CSS
View news in 3 pane or 2 pane modes
Subscribe to any RSS or Atom format in use
View items in a summary Newspaper View
Synchronize 2 or more BottomFeeders via HTTP or file import
Subscribe to feeds or feedlists
Supports HTTPS, HTTP Authentication, and HTTP Digest Authentication
Plugins for blogging, IRC, and MSN Messenger contacts
Easy to update or upgrade from within BottomFeeder
Save as many or as few feed items for as long as you want
Import or Export in common OPML format
Binary compatible on every platform. No need to recompile<<less
WMATA Disruptions 1.2
WMATA Service Disruptions OS X Dashboard Widget more>> Unique built-in search and browsing capability of over 100,000 feeds
Breaking News enables you to read all unread posts in one window
Save your search term in a Smart Channel and be notified as soon as the term appears again.
With iNews, adding your favorite feeds is easy. In addition to simply selecting "Add Feed", you can also search and add feeds from the PixelNews Database or even add a feed by dragging and dropping the valid RSS or Atom URL onto PixelNews.
iNews allows you to organize your feeds in Channels that are quickly accessible in the sidebar. Clicking on a Channel will reveal all the feeds in that Channel making it easy to view all your favorite PhotoBlogs in one Channel, World News in another, Movie review feeds in another, etc. You can name (and rename) your Channels anything youd like, and even customize your Channel view by narrowing it down to a specific feed or date range. Or Choose to show Breaking News on any Channel when you click on it.
The Breaking News Channel is your one stop look into all the latest, unread posts in your Channels or Smart Channels.<<less
Raster3D 2.7c
Raster3D - Protein and molecules viewer more>>
It uses an efficient software Z-buffer algorithm which is independent of any graphics hardware. Ancillary programs process atomic coordinates from PDB files into rendering descriptions for pictures composed of ribbons, space-filling atoms, bonds, ball+stick, etc.
Raster3D can also be used to render pictures composed in other programs such as Molscript in glorious 3D with highlights, shadowing, etc. Output is to pixel image files with 24 bits of color information per pixel.
RAPPER October 12 2005
RAPPER - Protein structure modelling more>>
It has been used for all-atom loop modelling (DePristo et al., de Bakker et al.), whole protein modelling under limited restraints (DePristo et al.), comparative modelling (de Bakker et al., in preparation), ab initio structure prediction, structure validation (Lovell et al.), and experimental structure determination with X-ray and nuclear magnetic resonance spectroscopy (DePristo et al.).

infoRSS 1.2.0
infoRSS 1.2.0 is a useful software which provides you a lightweight, non intrusive, RSS, ATOM, NNTP and HTML headlines reader for Firefox, Mozilla, Netscape and thunderbird. more>>
infoRSS 1.2.0 is a useful software which provides you with a lightweight, non intrusive, RSS, ATOM, NNTP and HTML headlines reader for Firefox, Mozilla, Netscape and thunderbird.
The extension installs a small icon (looks like an earth) in the status bar. The headlines are displayed in the beside this icon in the status bar or in a separate bar (top or bottom of the screen).
The interface is very simple to use: drag and drop new url of feed onto the extension icon to add a new feed or click on the extension icon to select a specific feed to read. The feeds can be grouped to allow multi-feed fetch and filter can be used to limit the number of headlines.
Major Features:
- RSS feed including RSS Gmail notifier (with https://mail.google.com/mail/feed/atom)
- ATOM feed
- NNTP feed
- HTML feed (in fact any text document on internet: RDF, txt, HTML...). Extraction with regular expression
- Support for SSL feed (HTTPS)
- Customized refresh time per feed
- Automatic or manual refresh
- Customized number of headlines to display per feed
- Customized number of character to display per feed (status bar is a limited area...)
- Customized favicon per feed or group
- Customized filter per feed : filter on title, subject, headline number, published date, received date, ...
- Enable/Disable filter
- Group of feeds
- Customized filter per group : filter for the group or combination with feed's filter and group
- Full associated HTML article in a simple clic on the headline
- Customized style sheet for headlines : font family, font size, background color, foreground color
- Display headlines in the status bar or in a separate bar (top or bottom)
- Manual resize of the status bar area
- Automatic size adjustment with the window width
- Skip headline
- Automatic scrolling feeds in the headline area
- Manual scrolling feeds in the headline area with scroll mouse
- Manual scrolling by pixel or by headline
- Right to left or left to right scrolling direction
- Customized scrolling speed
- Fade in/out headlines
- All headlines in the main menu as a submenu
- Automatic cycling between feed or group or within feed of a group
- Skip empty feed in cycling mode
- Popup when new headlines are published
- Customized icon bar beside the headline bar
- Mark all headlines as read
- View all headlines at once
- Flashing icon when refreshing
- Read article in tooltip, a new tab or a new window
- Tooltip on headline to see the full title, begin of article, all info or full article without opening a new tab
- Tooltip in HTML mode for rich description
- Tooltip that supports multimedia in ENCLOSURE tag : images are displayed beside the description, and audio and video files are played (podcasting, try feed http://inforss.mozdev.org/inforss.xml) with the firefox embedded multimedia plugin
- Size and type of the enclosure in the tooltip on the enclosure icon
- Tooltip on main icon to display the number of hedline / unread headline
- Option to play/mute podcast
- Display icon near headline in case of enclosure tag
- Persistence of viewed and banned headline even after the session
- Remote synchronization with FTP or WebDav server
- OPML import and export from a local file or a distant ressource (on internet)
- Export the repository in the bookmark hierarchy
- Display the repository on screen
- Display the RSS file in the browser by dragging the feed in the menu on the browser
- Detect RSS feed in the current page and add an item in the menu
- Contextual menu in Firefox to add a feed in the extension repository
- Add any URL in the clipboard to the menu to simply add it to the repository
- Delete a feed in the menu with drag and drop on the trash bin
- Add a feed in a group with drag and drop on the group icon in the menu
- Link to the main web page in one click
- Customized FF add feed menu (orange radar icon) to add feed in infoRSS
- Global activity switch
- Activity switch at the feed/group level
- Collapse headline bar if no headline
- Thumbnail image of the main URL in the option dialog
- Quick filter icon to filter in one click all displayed headlines
- Auto or manual decoding in the HTML feed
Enhancements:
- Compatibility with Firefox 3.5
- Bug fix with Javascript injection vulnerability issue
- Bug Fix 21105 Blank screen appear when you click on the updated feed
- Bug Fix 21076 The open infotip window disappears when rotating RSS feeds
- New translation for sr-RS
DashBlog 0.12b
DashBlog is a well designed and complete widget that enables you to go into your dashboard and quickly post an update. more>>
DashBlog 0.12b is a well designed and complete widget that enables you to go into your dashboard and quickly post an update. DashBlog was specifically designed to get around the hurdles that Web interfaces and blog posting software have always posed for the author: kludgy interfaces and slow startup times. Dashblog currently supports the BloggerAPI for posting downloads, but its backend was written to support other future APIs. Current on the todo list is ATOM, MetaWeblog, and MovableType.
Requirements: Mac OS X 10.4 or later

Tickershock 2.0
Scroll RSS feeds across your desktop. more>>
Inspired by the tickers of 24-hour cable news, Tickershock is an RSS, RDF and Atom news reader that displays news feeds anywhere on your desktop in a animated crawl or billboard display.
MovieWires 1.4.1
REALbasic plug-in for creating atom containers. more>>
MovieWires Plugin is accompanied with a bunch of classes that provide read-only properties (constants) that would help in get you a bit used to the Wired Movie API. You can avoid usage of these read-only properties by supplying the appropriate integer or four-char-strings. For this two helper functions are available: