analysis of algorithms
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Results 1 - 15 of about 974
Download (22KB)
Added: 2009-05-06 License: GPL Price: FREE
14 downloads
ROC Analysis 1.5
ROC Analysis is a very flexible and effective tool which graphs the Receiver Operating Characteristic (ROC) curve and calculates the Area Under the ROC Curve (AUC) using a nonparametric method. more>>
ROC Analysis 1.5 is a very flexible and effective tool which graphs the Receiver Operating Characteristic (ROC) curve and calculates the Area Under the ROC Curve (AUC) using a nonparametric method.
Download (1.2MB)
Added: 2009-01-11 License: Freeware Price:
downloads
Other version of ROC Analysis
ROC Analysis 1.4ROC Analysis 1.4 ROC Analysis - Graph receiver operating characteristic ... ROC Analysis ROC Analysis is a standalone Macintosh program that graphs the ReceiverLicense:Freeware
Mac Analysis 2.3.2
Avoid security breeches on servers. more>>
MacAnalysis is a program intended to avoid all intrusions and damages caused by hackers. The method of Macanalysis is indeed simple, it hacks your server (Unix, NT, Mac) like any experienced hacker and informs you how it did proceed and how to solve the backdoors efficiently (1200 holes recorded).
MacAnalysis also has functions such : LiveUpdate support, Trace IP, Ping, NameScan, Port Scan, Service Scan, NS lookup, System Information, Finger, Whois, ReverseIP, Traceroute, Looking Glass, OS Fingerprinting, Brute Force,Nph-Browser, Proxy Support, Network Info, ICMP logger, DUP Broadcast Scanner, and Telnet client .
<<lessMacAnalysis also has functions such : LiveUpdate support, Trace IP, Ping, NameScan, Port Scan, Service Scan, NS lookup, System Information, Finger, Whois, ReverseIP, Traceroute, Looking Glass, OS Fingerprinting, Brute Force,Nph-Browser, Proxy Support, Network Info, ICMP logger, DUP Broadcast Scanner, and Telnet client .
Download (4.1MB)
Added: 2004-11-24 License: Freeware Price:
1809 downloads
Graphical Analysis Updater 3.4
Graphical Analysis - For producing, analyzing, and printing graphs more>>
Graphical Analysis is an inexpensive, easy-to-learn program for producing, analyzing, and printing graphs. It is also great for importing data from a TI graphing calculator (using a TI-GRAPH LINK cable) or from a Palm OS handheld. It has been one of our most popular products for years and now its even better! We have rewritten Graphical Analysis, adding new features and updating its look and capabilities. Graphical Analysis has many of the same features that Logger Pro has, except it cannot collect live data.
Enhancements:
- Adds support for the USB direct cables included with TI-84 family calculators, double-Y graphs, and photo analysis.
<<lessEnhancements:
- Adds support for the USB direct cables included with TI-84 family calculators, double-Y graphs, and photo analysis.
Download (7.4MB)
Added: 2006-05-09 License: Freeware Price:
1270 downloads
Sequence Analysis 1.6
Sequence Analysis - DNA/protein sequence analysis more>>
Sequence editing, reverse complement, protein translation, ORF finding, secondary structure, composition, isoelectric point, primer design, pairwise comparison, publish layout, sequence reformatting. Fetches sequence entries directly from the NCBI via Accession number or GID. Reads most sequence formats.
This (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.
Enhancements:
- Fixed launching conflict introduced with QuickTime 7.0.4
- Digest: Using "REBase 601" enzyme list
- Allow launching with Java 5 (JDK 1.5).
<<lessThis (Java) application is a collage of coding projects which I have written over the past several years for various clients in my work as a bioinformatics consultant. These clients have graciously allowed me to release these works into the public domain as freeware.
Enhancements:
- Fixed launching conflict introduced with QuickTime 7.0.4
- Digest: Using "REBase 601" enzyme list
- Allow launching with Java 5 (JDK 1.5).
Download (2.1MB)
Added: 2006-01-18 License: Freeware Price:
1389 downloads
Other version of Sequence Analysis
Sequence Analysis is such a handy program which assists you in editing ...Sequence Analysis 1.6.0 is such a handy program which assists you in editingPrice: $0.00
License:Freeware
License:Freeware
Airfoil Analysis 1.0.2
Airfoil Analysis - Vortice-Panel method for airfoil analysis more>>
For aeronautical students, engineers, RC hobbyists or anyone who loves airplanes,Airfoil Analysis offers the finest implementation of the classic Vortice-Panel method for airfoil analysis.
Main features:
- Arbitrary shapes
- NACA 4,5 digits airfoils.
- Up to 200 panels.
- Calculate aerodynamic coefficients.
- Plot angle of attack dependencies.
- Plot velocity and pressure fields.
<<lessMain features:
- Arbitrary shapes
- NACA 4,5 digits airfoils.
- Up to 200 panels.
- Calculate aerodynamic coefficients.
- Plot angle of attack dependencies.
- Plot velocity and pressure fields.
Download (1.5MB)
Added: 2006-02-28 License: Freeware Price:
837 downloads
Chi-Square Analysis 1.0
Chi-Square Analysis calculates the chi-square statistic for 2x2 to 10x10 contingency tables more>>
Chi-Square Analysis is a standalone Macintosh application that calculates the chi-square statistic for 2x2 to 10x10 contingency tables. Also calculates the contingency, phi, and kappa statistics.
<<less Download (1.2MB)
Added: 2006-11-18 License: Freeware Price:
664 downloads
MacParallel Analysis 1.0
MacParallel Analysis contains tables of eigenvalues produced by Monte Carlo simulations more>>
MacParallel Analysis is a standalone Macintosh application that contains tables of eigenvalues produced by Monte Carlo simulations for determination of Parallel Analysis criteria.
<<less Download (1.2MB)
Added: 2006-11-28 License: Freeware Price:
1072 downloads
ASCA Profile Analysis 1.0
ASCA Profile Analysis is a Macintosh EXCEL spreadsheet template created to perform the syndromic profile analysis of ASCA scores more>>
ASCA Profile Analysis is a Macintosh EXCEL spreadsheet template created to perform the syndromic profile analysis of Adjustment Scale for Children and Adolescents scores.
<<less Download (41.1KB)
Added: 2006-11-28 License: Freeware Price:
1065 downloads
Mac ChiSquare Analysis 2.1
Mac ChiSquare Analysis - Chi-square, phi, contingency coeff., kappa more>>
Mac ChiSquare Analysis calculates chi-square statistic as well as phi, contingency, and kappa coefficients from up to a 10 x 10 table.
The chi-square test is used to compare the distributions of two independent samples. It is used with data in the form of frequencies. It is a nonparametric procedure that makes no assumptions about distribution shapes, variances, or levels of measurement (Diekhoff, 1996).
The chi-square test evaluates the correspondence between the expected and the observed number of cases in each of the cells of the variable by variable contingency table (Thompson, 1988). It is a test of whether or not a null hypothesis of no association should be rejected between the two independent variables.
If the chi-square test shows that there is a relationship between the two variables, then the contingency coefficient gives an indication of the degree of the relationship. (Bruning & Kintz, 1997). The contingency coefficient is similar in meaning to the correlation coefficient.
Cramers phi coefficient is a measure of association that is also similar to a correlation coefficient. It can assume a value between 0 and +1. See Sheskin (2000) for further detail.
Kappa is calculated when the rows and columns are symmetrical. Kappa is often used to examine inter-observer agreement and reflects the amount of agreement beyond chance (Norman & Streiner, 2000).
<<lessThe chi-square test is used to compare the distributions of two independent samples. It is used with data in the form of frequencies. It is a nonparametric procedure that makes no assumptions about distribution shapes, variances, or levels of measurement (Diekhoff, 1996).
The chi-square test evaluates the correspondence between the expected and the observed number of cases in each of the cells of the variable by variable contingency table (Thompson, 1988). It is a test of whether or not a null hypothesis of no association should be rejected between the two independent variables.
If the chi-square test shows that there is a relationship between the two variables, then the contingency coefficient gives an indication of the degree of the relationship. (Bruning & Kintz, 1997). The contingency coefficient is similar in meaning to the correlation coefficient.
Cramers phi coefficient is a measure of association that is also similar to a correlation coefficient. It can assume a value between 0 and +1. See Sheskin (2000) for further detail.
Kappa is calculated when the rows and columns are symmetrical. Kappa is often used to examine inter-observer agreement and reflects the amount of agreement beyond chance (Norman & Streiner, 2000).
Download (1.1MB)
Added: 2006-05-30 License: Freeware Price:
1254 downloads
Space Trajectory Analysis 081213
This provides you a with beneficial research tool which is capable of supporting the analysis phase of a space mission having the ability to analyze, determine, simulate, and visualize a wide range of space trajectories. more>> Space Trajectory Analysis 081213 provides you a with beneficial research tool which is capable of supporting the analysis phase of a space mission having the ability to analyze, determine, simulate, and visualize a wide range of space trajectories.
One of the STA aims is to promote the exchange of technical ideas, and raise knowledge and competence in the areas of applied mathematics, space engineering, and informatics.
Enhancements: Moved from Cocoa to Qt allowing several operating system at the same time.
Requirements: Mac OS X 10.4.10 or later.
Requirements: Mac OS X 10.4.10 or later.
Download (40.5MB)
Added: 2008-12-13 License: Free Price:
downloads
CLC Free Workbench 4.0.1
CLC Free Workbench - Bioinformatics program for DNA, RNA, and protein sequence analysis more>>
CLC Free Workbench creates a software environment enabling users to make basic bioinformatics analyses and smooth data management, combined with nice graphical viewing and output options.
CLC Free Workbench is a tool that enabling users to make basic bioinformatics analyses by create a software environment.
Main features:
- GenBank searching and viewing (linear and circular views)
- Multiple alignment of DNA, RNA and proteins (2 alignment algorithms)
- Advanced alignment editing and sequence editing
- Joining multiple alignments and multiple sequences into one
- Open reading frame determination
- Translation from DNA to proteins (all genetic translation tables)
- Reports with residue composition, molecular weight and iso electric point (for proteins)
- Neighbor-joining and UPGMA phylogenies
- Interactive restriction site analysis and viewing
- Other reporting facilities
- Import/export to a number of data formats
- Launch of external files
- Detailed History Log
- Batch runs of analyses such as DNA to protein translation.
Enhancements:
- Fixed error in conversion of old sequence data with lowercase characters
- Old data can now be converted through the help menu
- Fixed error when trying to save an element to non-selected location
- A few help updates
- Better license handling on Windows Vista
- Fixed error in alignment editing
<<lessCLC Free Workbench is a tool that enabling users to make basic bioinformatics analyses by create a software environment.
Main features:
- GenBank searching and viewing (linear and circular views)
- Multiple alignment of DNA, RNA and proteins (2 alignment algorithms)
- Advanced alignment editing and sequence editing
- Joining multiple alignments and multiple sequences into one
- Open reading frame determination
- Translation from DNA to proteins (all genetic translation tables)
- Reports with residue composition, molecular weight and iso electric point (for proteins)
- Neighbor-joining and UPGMA phylogenies
- Interactive restriction site analysis and viewing
- Other reporting facilities
- Import/export to a number of data formats
- Launch of external files
- Detailed History Log
- Batch runs of analyses such as DNA to protein translation.
Enhancements:
- Fixed error in conversion of old sequence data with lowercase characters
- Old data can now be converted through the help menu
- Fixed error when trying to save an element to non-selected location
- A few help updates
- Better license handling on Windows Vista
- Fixed error in alignment editing
Download (26.8MB)
Added: 2007-07-06 License: Freeware Price:
852 downloads
Java Neural Network Trainer 0.1
Java Neural Network Trainer is a neural network trainer with the ability to easily add new training algorithms more>>
Java Neural Network Trainer is a neural network trainer with the ability to easily add new training algorithms and training patterns.
It includes a parallel training graphical interface where you can view each trainer working in real-time in parallel.
<<lessIt includes a parallel training graphical interface where you can view each trainer working in real-time in parallel.
Download (20KB)
Added: 2006-03-24 License: GPL Price:
1318 downloads
ASCA Assistant 1.0
ASCA Assistant is a standalone Macintosh scoring application for the Adjustment Scales for Children and Adolescents (ASCA) more>>
ASCA Assistant is a standalone Macintosh scoring application for the Adjustment Scales for Children and Adolescents (ASCA). It also performs syndromic profile analysis, discriminant analysis, and situtype analysis. Only for those who own ASCA manual and protocols.
<<less Download (1.3MB)
Added: 2006-11-13 License: Freeware Price:
1076 downloads
CLC Protein Workbench 5.1
Advanced protein sequence anayses. more>>
CLC Protein Workbench 5.1 is a useful tool which provides a wide range of advanced protein analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
This 2 x 2 weeks of fully functional demo includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application.
Major Features:
- Protein sequence analysis
- Integrated 3D molecule view
- Transmembrane helix prediction
- Antigenicity
- Secondary protein structure prediction
- PFAM domain search
- Web-based prediction of signal peptides and their cleavage sites
- Hydrophobicity analyses and graphs
- Protein charge analysis and graphs
- Reverse translation from protein to gene (a number of translation tables)
- Interactive translations of DNA and RNA to protein (both single sequences and alignments)
- Proteolytic cleavage detection
- Report of protein statistics (one or more proteins in each report)
- Comprehensive report including a range of protein analyses in one document
- Database searches
- Web based sequence search using BLAST
- BLAST on local databases
- Build local BLAST databases
- GenBank Entrez searches
- UniProt searches (SwissProt/TrEMBL)
- PubMed lookup
- Web based lookup in UniProt, NCBI, and Google
- Pattern search
- Search for sequence matches
- Motif search for basic patterns
- Motif search using regular expressions
- Motif search with ProSite patterns
- Pattern discovery (unknown patterns)
- Project and data management
- Full integration of data input, data management, calculation results, and data export
- Detailed history log
- All types of files can be saved in local projects, and launched from the program
- Import and export of data in a large number of file formats
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects
- Other bioinformatics features
- DNA, RNA and protein sequence editor displaying both linear and circular molecules
- Multiple alignment of DNA, RNA, and proteins
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- Two proprietary algorithms
- ClustalW
- Muscle
- T-Coffee
- MAFFT
- Kalign
- Joining multiple alignments into one
- DNA, RNA, and protein alignment editor
- Interactive logo graphs along both DNA, RNA and Protein alignments
- Batch processing of analyses on multiple sequences in one work-step
- Advanced re-alignment and fix-point alignment option
- Manual annotation of sequences
- Dot plot based analyses
- Local complexity region analyses and complexity plots
- Gap fraction graphs
- G/C content analysis and graphs
- Advanced pairwise comparison
- Extract annotations
Enhancements:
- Better feedback on processes: there is a tool tip showing details and start time.
- Translation of DNA to protein in sequence views can now be set to follow existing CDS/ORF annotations.
- Much improved memory performance and processing time of large data sets
- Output and error log files are now placed in the application data directory in the user home
- Fixed error when parsing files from Clone Manager (cm5-files)
- UniProt search works again
Requirements:
- 3D viewing requires an OpenGL 3D graphics driver (included with almost all graphics cards)
- Mac OS X 10.4 or later (including Intel-based Macs)
- Windows 2000, Windows XP, or Windows Vista
- Linux: Redhat or SuSE
- 256 MB RAM required
- 2 GB RAM recommended
- 1024 x 768 display recommended
Download (37.6MB)
Added: 2009-05-31 License: update/patch Price:
14 downloads
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