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Adun 0.71

Adun 0.71


Adun is a new biomolecular simulator developed by the Computational Biophysics and Biochemistry Laboratory more>>
Adun is a new biomolecular simulator developed by the Computational Biophysics and Biochemistry Laboratory, a part of the Research Unit on Biomedical Informatics of the UPF.
Enhancements:
New Features and Improvements
- Minimisation
- BFGS, Conjugate Gradient and Steepest Descent algorithms available
- Initial short minimisation step added before initial production loop.
- Improved handling of exploding simulations
- On detecting an exploding simulation AdunCore transparently
- Rolls back the simulation to a previous state
- Performs a minimisation
- Restarts the simulation from the rolled back state.
- Improved container functionality
- Van der waals radius used to define exclusion volume on insertion of a system.
Bug Fixes
- Fixed critical bug that affected temperature stability.
- Fixed critical bug preventing use of Charmm & Amber.
- As a result of this fix its no longer necessary to specify the type of of Lennard-Jones function used by a force field.
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Added: 2007-05-30 License: GPL Price:
877 downloads
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