CLC Sequence Viewer 6.1

Our very first application, CLC Free Workbench, which came out in the summer of 2005 is now the subject of a name change.
From this day forward CLC Free Workbench will be known as CLC Sequence Viewer. Its still the same software and we havent removed any of the features and have no plans to do so.
CLC Sequence Viewer is a tool that enabling users to make basic bioinformatics analysis by create a software environment.

Main features:
- Multiple alignment of DNA, RNA, and proteins: Two proprietary algorithms, ClustalW, Muscle, T-Coffee, MAFFT, Kalign.
- Consensus sequence determination and management.
- Conservation score along alignments.
- Open reading frame determination.
- Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice.
- Translation from DNA to proteins (all genetic translation tables).
- Reports with residue composition, molecular weight and iso electric point (for proteins).
- Neighbor-joining and UPGMA phylogenies.
- Restriction site analysis and viewing.
- Create reverse complement.
- Shuffle sequence.
- Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio.
- Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases.
- All types of files can be saved in local projects and launched from the program.
- Detailed history log.
- User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences.
- Text-based sequence view.
- Easy printing of reports and graphics.
- Export of user-defined figures to various graphics file formats.
- Import and export of data in a large number of file formats.
- Option of working with different files and in different file projects at the same time.
- Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects.

System requirements:
- 256 MB RAM required.
- 512 MB RAM recommended.
- 1024 x 768 display recommended.

Enhancements
New features:
- Better feedback on processes: there is a tool tip showing details and start time.
- Much improved memory performance and processing time of large data sets.
- Output and error log files are now placed in the application data directory in the user home.
Bug fixes:
- Fixed error when parsing files from Clone Manager (cm5-files).