CLC Sequence Viewer 6.1

CLC Sequence Viewer 6.1 is a useful software which creates a software environment enabling users to make a large number of bioinformatics analyses, combined with smooth data management, and excellent graphical viewing and output options.

Major Features:

1. Bioinformatics features in CLC Sequence Viewer
   • Multiple alignment of DNA, RNA, and proteins
   • • Two proprietary algorithms
     • ClustalW
     • Muscle
     • T-Coffee
     • MAFFT
     • Kalign
   • Consensus sequence determination and management
   • Conservation score along alignments
   • Open reading frame determination
   • Easy access to web-based protein and nucleotide search in GenBank, including download facilities and full graphical overview of sequence annotations of your choice
   • Translation from DNA to proteins (all genetic translation tables)
   • Reports with residue composition, molecular weight and iso electric point (for proteins)
   • Neighbor-joining and UPGMA phylogenies
   • Restriction site analysis and viewing
   • Create reverse complement
   • Shuffle sequence
   • Option of viewing and graphical manipulation of bioinformatics analyses made in commercial workbenches from CLC bio
2. Other features in CLC Sequence Viewer
   • Full integration of data input, data management, calculations results, and data export. This eliminates time spent on manual data transfers between different programs and databases
   • All types of files can be saved in local projects and launched from the program
   • Detailed history log
   • User-friendly graphical tools used in order to find and work with relevant regions of DNA, RNA and protein sequences
   • Text-based sequence view
   • Easy printing of reports and graphics
   • Export of user-defined figures to various graphics file formats
   • Import and export of data in a large number of file formats
   • Option of working with different files and in different file projects at the same time
   • Option of working in several active workspaces at a time, enabling simultaneous work on multiple projects

Enhancements:

• Better feedback on processes: there is a tool tip showing details and start time.
• Much improved memory performance and processing time of large data sets
• Output and error log files are now placed in the application data directory in the user home
• Fixed error when parsing files from Clone Manager (cm5-files)

Requirements:

• Mac OS X 10.4 or later (including Intel-based Macs)
• Windows 2000, Windows XP, or Windows Vista
• Linux: Redhat or SuSE
• 256 MB RAM required
• 2 GB RAM recommended
• 1024 x 768 display recommended