CLC RNA Workbench 4.1

The CLC RNA Workbench gives the user easy access to a range of complex algorithms and options. RNA secondary structures can be predicted using state-of-the-art free energy minimization algorithms.
CLC RNA Workbench is a bioinformatics program for advanced RNA sequence analysis. All analyzes are fully integrated in one single, intuitive and user-friendly software application.

Main features:
- Secondary structure prediction.
- Graphical view and editing of secondary structure.
- Tabular view of structures and energy contributions.
- Symbolic representation in sequence view.
- Pattern search.
- BLAST searches.
- General sequence analyses.
- Nucleotide analyses.
- Sequence alignment.
- Dot plots.
- Virtual gel viewer.

System requirements:
- 256 MB RAM required.
- 512 MB RAM recommended.
- 1024 x 768 display recommended.

Version restrictions:
- 4 weeks fully functional trial.

Enhancements
New features:
- Better feedback on processes: there is a tool tip showing details and start time.
- Translation of DNA to protein in sequence views can now be set to follow existing CDS/ORF annotations.
- Much improved memory performance and processing time of large data sets.
- Output and error log files are now placed in the application data directory in the user home.
Bug fixes:
- Fixed error when parsing files from Clone Manager (cm5-files).